RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 CUL5Q93034 780 aa20.97■□□□□ 0.95
SDCBP-204ENST00000447182 GPR101Q96P66 508 aaPredicted RBP20.97■□□□□ 0.95
SDCBP-204ENST00000447182 ADAMTS1Q9UHI8 967 aa20.97■□□□□ 0.95
SDCBP-204ENST00000447182 ESYT3A0FGR9 886 aa20.96■□□□□ 0.95
SDCBP-204ENST00000447182 FRMD3A2A2Y4 597 aa20.96■□□□□ 0.95
SDCBP-204ENST00000447182 ERLIN2O94905 339 aa20.96■□□□□ 0.95
SDCBP-204ENST00000447182 MRPL12P52815 198 aaKnown RBP20.96■□□□□ 0.95
SDCBP-204ENST00000447182 ZNF543Q08ER8 600 aa20.96■□□□□ 0.95
SDCBP-204ENST00000447182 UBE2SQ16763 222 aa20.96■□□□□ 0.95
SDCBP-204ENST00000447182 MICALL1Q8N3F8 863 aa20.96■□□□□ 0.95
SDCBP-204ENST00000447182 SWAP70Q9UH65 585 aa20.96■□□□□ 0.95
SDCBP-204ENST00000447182 RTCBQ9Y3I0 505 aaKnown RBP20.96■□□□□ 0.95
SDCBP-204ENST00000447182 PPP1R11O60927 126 aaPredicted RBP20.96■□□□□ 0.95
SDCBP-204ENST00000447182 PDCLQ13371 301 aa20.96■□□□□ 0.95
SDCBP-204ENST00000447182 ADGRF4Q8IZF3 695 aa20.96■□□□□ 0.95
SDCBP-204ENST00000447182 LRRC47Q8N1G4 583 aaKnown RBP20.96■□□□□ 0.95
SDCBP-204ENST00000447182 SH2D3CQ8N5H7 860 aa20.96■□□□□ 0.95
SDCBP-204ENST00000447182 FAM133AQ8N9E0 248 aa20.96■□□□□ 0.95
SDCBP-204ENST00000447182 ARHGEF1Q92888 912 aaKnown RBP20.96■□□□□ 0.95
SDCBP-204ENST00000447182 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.96■□□□□ 0.95
SDCBP-204ENST00000447182 EMILIN3Q9NT22 766 aa20.96■□□□□ 0.95
SDCBP-204ENST00000447182 KIF13BQ9NQT8 1826 aa20.95■□□□□ 0.95
SDCBP-204ENST00000447182 PITPNM2Q9BZ72 1349 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 PLA2G4BP0C869 781 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 HSPA9P38646 679 aaKnown RBP20.95■□□□□ 0.94
SDCBP-204ENST00000447182 GPSM2P81274 684 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 TTC19Q6DKK2 380 aaPredicted RBP20.95■□□□□ 0.94
SDCBP-204ENST00000447182 PAGR1Q9BTK6 254 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 PACSIN1Q9BY11 444 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 GPCPD1Q9NPB8 672 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 BZW2Q9Y6E2 419 aaKnown RBP20.95■□□□□ 0.94
SDCBP-204ENST00000447182 ARFGEF1Q9Y6D6 1849 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 ATP8B3O60423 1300 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 NDUFAB1O14561 156 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 RAD51CO43502 376 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 ADAM9Q13443 819 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 HERC4Q5GLZ8 1057 aaPredicted RBP20.95■□□□□ 0.94
SDCBP-204ENST00000447182 KCTD16Q68DU8 428 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 NELFCDQ8IXH7 590 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 PLCB1Q9NQ66 1216 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 TBC1D7Q9P0N9 293 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 KIAA1024Q9UPX6 916 aa20.95■□□□□ 0.94
SDCBP-204ENST00000447182 ATF5Q9Y2D1 282 aaPredicted RBP20.95■□□□□ 0.94
SDCBP-204ENST00000447182 SRRM3A6NNA2 597 aaPredicted RBP20.94■□□□□ 0.94
SDCBP-204ENST00000447182 HMGB1P1B2RPK0 211 aaPredicted RBP20.94■□□□□ 0.94
SDCBP-204ENST00000447182 E9PMD0 336 aa20.94■□□□□ 0.94
SDCBP-204ENST00000447182 MARCH6O60337 910 aa20.94■□□□□ 0.94
SDCBP-204ENST00000447182 SSBP05455 408 aaKnown RBP eCLIP20.94■□□□□ 0.94
SDCBP-204ENST00000447182 CYP11B2P19099 503 aa20.94■□□□□ 0.94
SDCBP-204ENST00000447182 ATP2B4P23634 1241 aa20.94■□□□□ 0.94
SDCBP-204ENST00000447182 KCNH2Q12809 1159 aa20.94■□□□□ 0.94
SDCBP-204ENST00000447182 DPY19L2P1Q6NXN4 242 aa20.94■□□□□ 0.94
SDCBP-204ENST00000447182 GPBP1Q86WP2 473 aa20.94■□□□□ 0.94
SDCBP-204ENST00000447182 SUGP1Q8IWZ8 645 aaKnown RBP20.94■□□□□ 0.94
SDCBP-204ENST00000447182 TBC1D22AQ8WUA7 517 aa20.94■□□□□ 0.94
SDCBP-204ENST00000447182 TAF4BQ92750 862 aa20.94■□□□□ 0.94
SDCBP-204ENST00000447182 PBKQ96KB5 322 aa20.94■□□□□ 0.94
SDCBP-204ENST00000447182 ATP6V1G3Q96LB4 118 aa20.94■□□□□ 0.94
SDCBP-204ENST00000447182 RNPC3Q96LT9 517 aaKnown RBP20.94■□□□□ 0.94
SDCBP-204ENST00000447182 ISCUQ9H1K1 167 aa20.94■□□□□ 0.94
SDCBP-204ENST00000447182 EPN3Q9H201 632 aa20.94■□□□□ 0.94
SDCBP-204ENST00000447182 TAF1DQ9H5J8 278 aaPredicted RBP20.94■□□□□ 0.94
SDCBP-204ENST00000447182 PACSIN2Q9UNF0 486 aaPredicted RBP20.94■□□□□ 0.94
SDCBP-204ENST00000447182 MYH4Q9Y623 1939 aa20.94■□□□□ 0.94
SDCBP-204ENST00000447182 CETN3O15182 167 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 TTLL1O95922 423 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 NR1D1P20393 614 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 LSP1P33241 339 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 EPS15P42566 896 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 USP11P51784 963 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 RPS6KA1Q15418 735 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 IFI16Q16666 785 aaKnown RBP20.93■□□□□ 0.94
SDCBP-204ENST00000447182 MFSD14BQ5SR56 506 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 IRF2BP2Q7Z5L9 587 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 ACTRT1Q8TDG2 376 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 BHMG1C9JSJ3 638 aaPredicted RBP20.93■□□□□ 0.94
SDCBP-204ENST00000447182 UFL1O94874 794 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 AKR1B1P15121 316 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 LIG3P49916 1009 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 ATP1A2P50993 1020 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 DNA2P51530 1060 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 GUCY2FP51841 1108 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 ARID5AQ03989 594 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 LRIG3Q6UXM1 1119 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 MMS22LQ6ZRQ5 1243 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 SCFD2Q8WU76 684 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 GJA10Q969M2 543 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 RABEP2Q9H5N1 569 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 KCNMB3Q9NPA1 279 aa20.93■□□□□ 0.94
SDCBP-204ENST00000447182 ZBTB5O15062 677 aa20.92■□□□□ 0.94
SDCBP-204ENST00000447182 KIF4AO95239 1232 aa20.92■□□□□ 0.94
SDCBP-204ENST00000447182 ANXA13P27216 316 aa20.92■□□□□ 0.94
SDCBP-204ENST00000447182 CUL1Q13616 776 aa20.92■□□□□ 0.94
SDCBP-204ENST00000447182 GPATCH4Q5T3I0 446 aaKnown RBP20.92■□□□□ 0.94
SDCBP-204ENST00000447182 FRMD5Q7Z6J6 570 aa20.92■□□□□ 0.94
SDCBP-204ENST00000447182 AMIGO3Q86WK7 504 aa20.92■□□□□ 0.94
SDCBP-204ENST00000447182 CALR3Q96L12 384 aaKnown RBP20.92■□□□□ 0.94
SDCBP-204ENST00000447182 PSTPIP2Q9H939 334 aa20.92■□□□□ 0.94
SDCBP-204ENST00000447182 KANSL2Q9H9L4 492 aa20.92■□□□□ 0.94
SDCBP-204ENST00000447182 TRAF3IP3Q9Y228 551 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms