RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 CCM2LQ9NUG4 571 aaPredicted RBP2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 CGGBP1Q9UFW8 167 aaPredicted RBP2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 ADAM30Q9UKF2 790 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF451Q9Y4E5 1061 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 TTC24A2A3L6 582 aaPredicted RBP2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 POM121BA6NF01 834 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 UBXN7O94888 489 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 TBC1D8O95759 1140 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 SLFN14P0C7P3 912 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 MYCLP12524 364 aaPredicted RBP2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 GFRA1P56159 465 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 RNASE9P60153 205 aaKnown RBP2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 KCNC4Q03721 635 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 RILPL1Q5EBL4 403 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 ATAT1Q5SQI0 421 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 SPATA1Q5VX52 437 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 GDF6Q6KF10 455 aaPredicted RBP2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 B3GNT9Q6UX72 402 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 BTN2A1Q7KYR7 527 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 OVCH2Q7RTZ1 564 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 GPR155Q7Z3F1 870 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 IQCA1Q86XH1 822 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 EFHBQ8N7U6 833 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 BAHD1Q8TBE0 780 aaPredicted RBP2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 AFAP1L1Q8TED9 768 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 XAGE3Q8WTP9 111 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 TRAPPC12Q8WVT3 735 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 JADE3Q92613 823 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 MUL1Q969V5 352 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 ACSF2Q96CM8 615 aaPredicted RBP2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 TMEM87BQ96K49 555 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 PPP1R16BQ96T49 567 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 BHMT2Q9H2M3 363 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 ITM2CQ9NQX7 267 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 SH2B1Q9NRF2 756 aaPredicted RBP2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 KRT84Q9NSB2 600 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 CCDC39Q9UFE4 941 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 TMX2Q9Y320 296 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 CCDC180Q9P1Z9 1646 aa2.69□□□□□ -1.98
CCDC88A-208ENST00000444458 ASXL2Q76L83 1435 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 TRIM64A6NGJ6 449 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 TRIM64BA6NI03 449 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 FZD9O00144 591 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 WNT7AO00755 349 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 KDM1AO60341 852 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 EIF4EBP3O60516 100 aaPredicted RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 MTA2O94776 668 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 POLBP06746 335 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 CPB1P15086 417 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 IL6STP40189 918 aaPredicted RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF131P52739 623 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 KRT85P78386 507 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 ARHGAP44Q17R89 818 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 PGS1Q32NB8 556 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 WDR44Q5JSH3 913 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 TOR2AQ5JU69 321 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 ABHD17CQ6PCB6 329 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 ELMSAN1Q6PJG2 1045 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 NPNTQ6UXI9 565 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 C7orf61Q8IZ16 206 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 ZMAT2Q96NC0 199 aaKnown RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 TSPAN18Q96SJ8 248 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 USP26Q9BXU7 913 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 SMOC1Q9H4F8 434 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 ATP6V0A4Q9HBG4 840 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 OXSMQ9NWU1 459 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 MARK1Q9P0L2 795 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 PDP2Q9P2J9 529 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 FRMD4AQ9P2Q2 1039 aaPredicted RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 JAG2Q9Y219 1238 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 EMC9Q9Y3B6 208 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 FIGNL2A6NMB9 653 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 H3BML4 177 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 DDX3XO00571 662 aaKnown RBP eCLIP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 CLGNO14967 610 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 ADAMTS3O15072 1205 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 MEFVO15553 781 aaPredicted RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 WIPF1O43516 503 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 NCK2O43639 380 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 POU2F2P09086 479 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 HOXD12P35452 270 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 PIK3CBP42338 1070 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 GPLD1P80108 840 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 CNN3Q15417 329 aaKnown RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 NTRK3Q16288 839 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 DGKKQ5KSL6 1271 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 SAMD5Q5TGI4 173 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 CIAPIN1Q6FI81 312 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 TXLNBQ8N3L3 684 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 HVCN1Q96D96 273 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 RMDN3Q96TC7 470 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 QRSL1Q9H0R6 528 aaKnown RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 TMEM60Q9H2L4 133 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 GP6Q9HCN6 339 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 MBIPQ9NS73 344 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 ANKEF1Q9NU02 776 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 CFDP1Q9UEE9 299 aaPredicted RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 ACAD8Q9UKU7 415 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 OGDHLQ9ULD0 1010 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 PCDHB12Q9Y5F1 795 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms