RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 CCT7Q99832 543 aa3.04□□□□□ -1.92
LIG4-203ENST00000442234 NUP58Q9BVL2 599 aa3.04□□□□□ -1.92
LIG4-203ENST00000442234 SLC7A5P2Q9GIP4 190 aa3.04□□□□□ -1.92
LIG4-203ENST00000442234 CARD9Q9H257 536 aa3.04□□□□□ -1.92
LIG4-203ENST00000442234 VIPAS39Q9H9C1 493 aa3.04□□□□□ -1.92
LIG4-203ENST00000442234 POLD4Q9HCU8 107 aa3.04□□□□□ -1.92
LIG4-203ENST00000442234 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.04□□□□□ -1.92
LIG4-203ENST00000442234 C9orf78Q9NZ63 289 aaPredicted RBP3.04□□□□□ -1.92
LIG4-203ENST00000442234 NARFQ9UHQ1 456 aa3.04□□□□□ -1.92
LIG4-203ENST00000442234 CROTQ9UKG9 612 aa3.04□□□□□ -1.92
LIG4-203ENST00000442234 SATB2Q9UPW6 733 aa3.04□□□□□ -1.92
LIG4-203ENST00000442234 ATP11BQ9Y2G3 1177 aa3.04□□□□□ -1.92
LIG4-203ENST00000442234 PCDHAC2Q9Y5I4 1007 aa3.04□□□□□ -1.92
LIG4-203ENST00000442234 PRAG1Q86YV5 1406 aa3.04□□□□□ -1.92
LIG4-203ENST00000442234 COL16A1Q07092 1604 aaPredicted RBP3.04□□□□□ -1.92
LIG4-203ENST00000442234 UNC79Q9P2D8 2635 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 DPPA5A6NC42 116 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 TRIM64CA6NLI5 447 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 RNMTO43148 476 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 SORBS3O60504 671 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 GNAI3P08754 354 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 LINGO3P0C6S8 592 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 MSL3P1P0C860 447 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 TRIM27P14373 513 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 ATP2A2P16615 1042 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 FUT4P22083 530 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 RPL13P26373 211 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 GJB2P29033 226 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 HDAC4P56524 1084 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 UBASH3AP57075 661 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 IRF5Q13568 498 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 HLTFQ14527 1009 aaKnown RBP eCLIP3.03□□□□□ -1.92
LIG4-203ENST00000442234 TNIP1Q15025 636 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 ZNF790Q6PG37 636 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 MAEAQ7L5Y9 396 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 UBE3BQ7Z3V4 1068 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 PPP1R42Q7Z4L9 355 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 NLRP14Q86W24 1093 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 RAB11FIP4Q86YS3 637 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 RPAP2Q8IXW5 612 aaPredicted RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 TRMT2AQ8IZ69 625 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 RTKN2Q8IZC4 609 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 RNF10Q8N5U6 811 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 SMYD1Q8NB12 490 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 WNT2BQ93097 391 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 MAK16Q9BXY0 300 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 EIF2AQ9BY44 585 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 R3HDMLQ9H3Y0 253 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 RNF186Q9NXI6 227 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 NAV2Q8IVL1 2488 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 A0A087WZG4 1122 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 CCL15-CCL14A0A0B4J2E2 113 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 TMEM232C9JQI7 657 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 HNRNPRO43390 633 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 ECE2O60344 883 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 DTNBO60941 627 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 CD46P15529 392 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 NPR1P16066 1061 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 RFX1P22670 979 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 MTTPP55157 894 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 HDLBPQ00341 1268 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 NSUN2Q08J23 767 aaKnown RBP eCLIP3.03□□□□□ -1.92
LIG4-203ENST00000442234 TUBB2AQ13885 445 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 CCL15Q16663 113 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 PROX2Q3B8N5 592 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 HABP4Q5JVS0 413 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 CFAP58Q5T655 872 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 TMCO4Q5TGY1 634 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 SUSD4Q5VX71 490 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 OTUD7BQ6GQQ9 843 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 TMEM53Q6P2H8 277 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 FAM173BQ6P4H8 233 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 ANKRD13DQ6ZTN6 518 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 C11orf57Q6ZUT1 292 aaPredicted RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 YTHDF3Q7Z739 585 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 KRI1Q8N9T8 703 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 COG1Q8WTW3 980 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 CELF1Q92879 486 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 CLIP3Q96DZ5 547 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 CEP295NLQ96MC4 621 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 CCT8L2Q96SF2 557 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 DESI2Q9BSY9 194 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 TUBB2BQ9BVA1 445 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 BRIP1Q9BX63 1249 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 TDRD3Q9H7E2 651 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 CHPF2Q9P2E5 772 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 TUBGCP4Q9UGJ1 667 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 NOB1Q9ULX3 412 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 SSX2IPQ9Y2D8 614 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 TMED5Q9Y3A6 229 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 USP42Q9H9J4 1324 aaKnown RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 COL6A3P12111 3177 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 AATKQ6ZMQ8 1374 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 BIN1O00499 593 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 IRS4O14654 1257 aaPredicted RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 FKTNO75072 461 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 MAP4K4O95819 1239 aaPredicted RBP3.03□□□□□ -1.92
LIG4-203ENST00000442234 IL4RP24394 825 aa3.03□□□□□ -1.92
LIG4-203ENST00000442234 LSP1P33241 339 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms