RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 BLIDQ8IZY5 108 aa17.28■□□□□ 0.36
LIMS3-201ENST00000437679 NECAB1Q8N987 351 aa17.28■□□□□ 0.36
LIMS3-201ENST00000437679 WASF1Q92558 559 aa17.28■□□□□ 0.36
LIMS3-201ENST00000437679 GLG1Q92896 1179 aa17.28■□□□□ 0.36
LIMS3-201ENST00000437679 AIFM3Q96NN9 605 aa17.28■□□□□ 0.36
LIMS3-201ENST00000437679 CTAGE1Q96RT6 745 aa17.28■□□□□ 0.36
LIMS3-201ENST00000437679 SMARCAD1Q9H4L7 1026 aa17.28■□□□□ 0.36
LIMS3-201ENST00000437679 SELPP16109 830 aa17.27■□□□□ 0.36
LIMS3-201ENST00000437679 SMAD3P84022 425 aaKnown RBP17.27■□□□□ 0.36
LIMS3-201ENST00000437679 ZNF200P98182 395 aaPredicted RBP17.27■□□□□ 0.36
LIMS3-201ENST00000437679 ITGB3BPQ13352 177 aaPredicted RBP17.27■□□□□ 0.36
LIMS3-201ENST00000437679 DEFB128Q7Z7B8 93 aa17.27■□□□□ 0.36
LIMS3-201ENST00000437679 DAGLBQ8NCG7 672 aa17.27■□□□□ 0.36
LIMS3-201ENST00000437679 HERVK_113Q902F9 699 aa17.27■□□□□ 0.36
LIMS3-201ENST00000437679 DHX38Q92620 1227 aaKnown RBP17.27■□□□□ 0.36
LIMS3-201ENST00000437679 ATP6V0A1Q93050 837 aa17.27■□□□□ 0.36
LIMS3-201ENST00000437679 GTF3C6Q969F1 213 aa17.27■□□□□ 0.36
LIMS3-201ENST00000437679 RNPEPQ9H4A4 650 aa17.27■□□□□ 0.36
LIMS3-201ENST00000437679 AZI2Q9H6S1 392 aa17.27■□□□□ 0.36
LIMS3-201ENST00000437679 ERAP1Q9NZ08 941 aa17.27■□□□□ 0.36
LIMS3-201ENST00000437679 ORC3Q9UBD5 711 aaPredicted RBP17.27■□□□□ 0.36
LIMS3-201ENST00000437679 TANC1Q9C0D5 1861 aa17.27■□□□□ 0.35
LIMS3-201ENST00000437679 SCN5AQ14524 2016 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 IGLV3-22A0A075B6J6 115 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.26■□□□□ 0.35
LIMS3-201ENST00000437679 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.26■□□□□ 0.35
LIMS3-201ENST00000437679 IPO5O00410 1097 aaKnown RBP17.26■□□□□ 0.35
LIMS3-201ENST00000437679 PARNO95453 639 aaKnown RBP17.26■□□□□ 0.35
LIMS3-201ENST00000437679 LARGE1O95461 756 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 CTDNEP1O95476 244 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 CIITAP33076 1130 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 USP11P51784 963 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 ACTR2P61160 394 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 RBL2Q08999 1139 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 HIC1Q14526 733 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 PRR16Q569H4 304 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 LRRC8DQ7L1W4 858 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 OTOP2Q7RTS6 562 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 ZNF577Q9BSK1 485 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 SETD4Q9NVD3 440 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 TCEAL9Q9UHQ7 104 aa17.26■□□□□ 0.35
LIMS3-201ENST00000437679 EMSYQ7Z589 1322 aa17.25■□□□□ 0.35
LIMS3-201ENST00000437679 DDX39AO00148 427 aaKnown RBP17.25■□□□□ 0.35
LIMS3-201ENST00000437679 LGR5O75473 907 aa17.25■□□□□ 0.35
LIMS3-201ENST00000437679 CKBP12277 381 aa17.25■□□□□ 0.35
LIMS3-201ENST00000437679 ACTN1P12814 892 aa17.25■□□□□ 0.35
LIMS3-201ENST00000437679 MARK3P27448 753 aa17.25■□□□□ 0.35
LIMS3-201ENST00000437679 HOXC8P31273 242 aa17.25■□□□□ 0.35
LIMS3-201ENST00000437679 RASIP1Q5U651 963 aa17.25■□□□□ 0.35
LIMS3-201ENST00000437679 SERINC5Q86VE9 423 aa17.25■□□□□ 0.35
LIMS3-201ENST00000437679 DEFB123Q8N688 67 aa17.25■□□□□ 0.35
LIMS3-201ENST00000437679 TBCKQ8TEA7 893 aa17.25■□□□□ 0.35
LIMS3-201ENST00000437679 FTOQ9C0B1 505 aaKnown RBP eCLIP17.25■□□□□ 0.35
LIMS3-201ENST00000437679 UPF2Q9HAU5 1272 aaKnown RBP17.25■□□□□ 0.35
LIMS3-201ENST00000437679 TBC1D22BQ9NU19 505 aa17.25■□□□□ 0.35
LIMS3-201ENST00000437679 KCNJ14Q9UNX9 436 aa17.25■□□□□ 0.35
LIMS3-201ENST00000437679 LIMCH1Q9UPQ0 1083 aa17.25■□□□□ 0.35
LIMS3-201ENST00000437679 NRCAMQ92823 1304 aa17.24■□□□□ 0.35
LIMS3-201ENST00000437679 TREHO43280 583 aa17.24■□□□□ 0.35
LIMS3-201ENST00000437679 PPFIA1Q13136 1202 aa17.24■□□□□ 0.35
LIMS3-201ENST00000437679 TRIM71Q2Q1W2 868 aaKnown RBP17.24■□□□□ 0.35
LIMS3-201ENST00000437679 FAM109BQ6ICB4 259 aaPredicted RBP17.24■□□□□ 0.35
LIMS3-201ENST00000437679 KRT25Q7Z3Z0 450 aa17.24■□□□□ 0.35
LIMS3-201ENST00000437679 TNPO1Q92973 898 aaKnown RBP17.24■□□□□ 0.35
LIMS3-201ENST00000437679 UIMC1Q96RL1 719 aa17.24■□□□□ 0.35
LIMS3-201ENST00000437679 PHF20Q9BVI0 1012 aa17.24■□□□□ 0.35
LIMS3-201ENST00000437679 ZBBXA8MT70 800 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 M0R2N6 131 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 DTNBO60941 627 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 THPOP40225 353 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 RBM25P49756 843 aaKnown RBP17.23■□□□□ 0.35
LIMS3-201ENST00000437679 STAT5BP51692 787 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 NONOQ15233 471 aaKnown RBP eCLIP17.23■□□□□ 0.35
LIMS3-201ENST00000437679 NPY5RQ15761 445 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 ZNF697Q5TEC3 545 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 FAM160B1Q5W0V3 765 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 MIS18BP1Q6P0N0 1132 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 PLPPR4Q7Z2D5 763 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 NSUN7Q8NE18 718 aaKnown RBP17.23■□□□□ 0.35
LIMS3-201ENST00000437679 LMBR1Q8WVP7 490 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 WNT8BQ93098 351 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 VWCEQ96DN2 955 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 PCYT2Q99447 389 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 CXXC1Q9P0U4 656 aaPredicted RBP17.23■□□□□ 0.35
LIMS3-201ENST00000437679 SLC4A7Q9Y6M7 1214 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 LAMA2P24043 3122 aaKnown RBP17.23■□□□□ 0.35
LIMS3-201ENST00000437679 TET1Q8NFU7 2136 aa17.23■□□□□ 0.35
LIMS3-201ENST00000437679 CCDC194A0A1B0GVG4 234 aa17.22■□□□□ 0.35
LIMS3-201ENST00000437679 BACH1O14867 736 aa17.22■□□□□ 0.35
LIMS3-201ENST00000437679 DHX15O43143 795 aaKnown RBP17.22■□□□□ 0.35
LIMS3-201ENST00000437679 ATG7O95352 703 aa17.22■□□□□ 0.35
LIMS3-201ENST00000437679 CCNE2O96020 404 aa17.22■□□□□ 0.35
LIMS3-201ENST00000437679 FDPSP14324 419 aaKnown RBP17.22■□□□□ 0.35
LIMS3-201ENST00000437679 KRT76Q01546 638 aa17.22■□□□□ 0.35
LIMS3-201ENST00000437679 ZNF618Q5T7W0 954 aa17.22■□□□□ 0.35
LIMS3-201ENST00000437679 ZNF746Q6NUN9 644 aaPredicted RBP17.22■□□□□ 0.35
LIMS3-201ENST00000437679 Q7L0L9 218 aa17.22■□□□□ 0.35
LIMS3-201ENST00000437679 KIF2CQ99661 725 aa17.22■□□□□ 0.35
LIMS3-201ENST00000437679 TRPC6Q9Y210 931 aa17.22■□□□□ 0.35
LIMS3-201ENST00000437679 RRN3P2A6NIE6 340 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms