RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 MYO7AQ13402 2215 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 HAS3O00219 553 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 TLL1O43897 1013 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 PPP1R11O60927 126 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-208ENST00000437607 RGS20O76081 388 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 CKBP12277 381 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 PSEN2P49810 448 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 FOSBP53539 338 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 GHRHRQ02643 423 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 TRIM29Q14134 588 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 TRIM71Q2Q1W2 868 aaKnown RBP13.89□□□□□ -0.19
PTPRF-208ENST00000437607 CNKSR3Q6P9H4 555 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 FBXO11Q86XK2 927 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 MCF2L2Q86YR7 1114 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 CMTR1Q8N1G2 835 aaKnown RBP13.89□□□□□ -0.19
PTPRF-208ENST00000437607 SRBD1Q8N5C6 995 aaKnown RBP13.89□□□□□ -0.19
PTPRF-208ENST00000437607 CCDC155Q8N6L0 562 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 VAT1LQ9HCJ6 419 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 CHMP5Q9NZZ3 219 aa13.89□□□□□ -0.19
PTPRF-208ENST00000437607 KIAA1671Q9BY89 1806 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 VPS37CA5D8V6 355 aaPredicted RBP13.88□□□□□ -0.19
PTPRF-208ENST00000437607 KIF28PB7ZC32 967 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 H3BQV1 296 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 DTNBO60941 627 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 EIF3JO75822 258 aaKnown RBP13.88□□□□□ -0.19
PTPRF-208ENST00000437607 F2P00734 622 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 CFBP00751 764 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 NR3C2P08235 984 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 ZNF286BP0CG31 522 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 PDIA4P13667 645 aaKnown RBP13.88□□□□□ -0.19
PTPRF-208ENST00000437607 XBP1P17861 261 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 KCNJ6P48051 423 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 HSD17B4P51659 736 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 NUCB2P80303 420 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 ZNF200P98182 395 aaPredicted RBP13.88□□□□□ -0.19
PTPRF-208ENST00000437607 MBTPS1Q14703 1052 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 DGKDQ16760 1214 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 AAK1Q2M2I8 961 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 ARHGEF16Q5VV41 709 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 GDPD5Q8WTR4 605 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 MTMR8Q96EF0 704 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 RRP36Q96EU6 259 aaKnown RBP13.88□□□□□ -0.19
PTPRF-208ENST00000437607 ALG1Q9BT22 464 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 COG5Q9UP83 839 aa13.88□□□□□ -0.19
PTPRF-208ENST00000437607 MRPL11Q9Y3B7 192 aaKnown RBP13.88□□□□□ -0.19
PTPRF-208ENST00000437607 PRPF3O43395 683 aaKnown RBP13.87□□□□□ -0.19
PTPRF-208ENST00000437607 HOXD8P13378 290 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-208ENST00000437607 SMARCA1P28370 1054 aa13.87□□□□□ -0.19
PTPRF-208ENST00000437607 DDIT3P35638 169 aa13.87□□□□□ -0.19
PTPRF-208ENST00000437607 FUT2Q10981 343 aa13.87□□□□□ -0.19
PTPRF-208ENST00000437607 MFSD10Q14728 455 aa13.87□□□□□ -0.19
PTPRF-208ENST00000437607 KIAA0753Q2KHM9 967 aa13.87□□□□□ -0.19
PTPRF-208ENST00000437607 SLC35G1Q2M3R5 365 aa13.87□□□□□ -0.19
PTPRF-208ENST00000437607 LARP1BQ659C4 914 aaKnown RBP13.87□□□□□ -0.19
PTPRF-208ENST00000437607 HOMER1Q86YM7 354 aa13.87□□□□□ -0.19
PTPRF-208ENST00000437607 PPTC7Q8NI37 304 aa13.87□□□□□ -0.19
PTPRF-208ENST00000437607 PIBF1Q8WXW3 757 aa13.87□□□□□ -0.19
PTPRF-208ENST00000437607 C8orf76Q96K31 380 aa13.87□□□□□ -0.19
PTPRF-208ENST00000437607 MRVI1Q9Y6F6 885 aa13.87□□□□□ -0.19
PTPRF-208ENST00000437607 STX6O43752 255 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 SORBS3O60504 671 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 GJB5O95377 273 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 SCG2P13521 617 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 SYT1P21579 422 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 SP2Q02086 613 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 PTK7Q13308 1070 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 MKRN4PQ13434 485 aaPredicted RBP13.86□□□□□ -0.19
PTPRF-208ENST00000437607 LAMC2Q13753 1193 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 HSDL1Q3SXM5 330 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 ZNF618Q5T7W0 954 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 MYSM1Q5VVJ2 828 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 C7orf31Q8N865 590 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 IL31RAQ8NI17 732 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 GPKOWQ92917 476 aaPredicted RBP eCLIP13.86□□□□□ -0.19
PTPRF-208ENST00000437607 PDCD2LQ9BRP1 358 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 AMNQ9BXJ7 453 aa13.86□□□□□ -0.19
PTPRF-208ENST00000437607 ABHD14A-ACY1A0A1B0GW23 586 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 hCG_1642624A0A1W2PR95 340 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 LINC01553A4QN01 128 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 hCG_1984214I3L0E3 225 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 CYTH3O43739 400 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 PARNO95453 639 aaKnown RBP13.85□□□□□ -0.19
PTPRF-208ENST00000437607 MYCLP12524 364 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-208ENST00000437607 FDPSP14324 419 aaKnown RBP13.85□□□□□ -0.19
PTPRF-208ENST00000437607 PGM5Q15124 567 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 HEATR3Q7Z4Q2 680 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 DHX37Q8IY37 1157 aaKnown RBP13.85□□□□□ -0.19
PTPRF-208ENST00000437607 ZNF713Q8N859 430 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-208ENST00000437607 CCDC148Q8NFR7 591 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 KHSRPQ92945 711 aaKnown RBP eCLIP13.85□□□□□ -0.19
PTPRF-208ENST00000437607 HLA-CQ95604 372 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 ZFP91Q96JP5 570 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-208ENST00000437607 RAD9AQ99638 391 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 ZBED2Q9BTP6 218 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 KATNAL1Q9BW62 490 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 EPHX3Q9H6B9 360 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 BCAS3Q9H6U6 928 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 RIOX1Q9H6W3 641 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 SUGCTQ9HAC7 445 aa13.85□□□□□ -0.19
PTPRF-208ENST00000437607 LMCD1Q9NZU5 365 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms