RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CPP00450 1065 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 CYP7A1P22680 504 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 PTPREP23469 700 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 MMADHCQ9H3L0 296 aaPredicted RBP7.72□□□□□ -1.17
VPS53-204ENST00000437048 CDV3Q9UKY7 258 aaKnown RBP7.72□□□□□ -1.17
VPS53-204ENST00000437048 SP100P23497 879 aaPredicted RBP7.72□□□□□ -1.17
VPS53-204ENST00000437048 EXOC3L4Q17RC7 722 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 THAP11Q96EK4 314 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 CD209Q9NNX6 404 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 SH3GLB2Q9NR46 395 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 NDUFA10O95299 355 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 GPATCH4Q5T3I0 446 aaKnown RBP7.72□□□□□ -1.17
VPS53-204ENST00000437048 PCNX4Q63HM2 1172 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 FRMD8P1Q9BZ68 369 aaPredicted RBP7.72□□□□□ -1.17
VPS53-204ENST00000437048 KLC2Q9H0B6 622 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 ABCC10Q5T3U5 1492 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 BIRC2Q13490 618 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 TBC1D9BQ66K14 1250 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 CC2D1AQ6P1N0 951 aaPredicted RBP7.72□□□□□ -1.17
VPS53-204ENST00000437048 KLHL7Q8IXQ5 586 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 FAM133BQ5BKY9 247 aaKnown RBP7.71□□□□□ -1.17
VPS53-204ENST00000437048 PPP4R4Q6NUP7 873 aa7.71□□□□□ -1.17
VPS53-204ENST00000437048 EFHBQ8N7U6 833 aa7.71□□□□□ -1.17
VPS53-204ENST00000437048 EIF1ADQ8N9N8 165 aaKnown RBP7.71□□□□□ -1.17
VPS53-204ENST00000437048 HINFPQ9BQA5 517 aa7.71□□□□□ -1.17
VPS53-204ENST00000437048 PHACTR1Q9C0D0 580 aa7.71□□□□□ -1.17
VPS53-204ENST00000437048 MRPL44Q9H9J2 332 aaKnown RBP7.71□□□□□ -1.17
VPS53-204ENST00000437048 RSL24D1Q9UHA3 163 aaKnown RBP7.71□□□□□ -1.17
VPS53-204ENST00000437048 PLB1Q6P1J6 1458 aa7.71□□□□□ -1.17
VPS53-204ENST00000437048 ZBTB7BO15156 539 aaPredicted RBP7.71□□□□□ -1.17
VPS53-204ENST00000437048 ATP1A2P50993 1020 aa7.71□□□□□ -1.17
VPS53-204ENST00000437048 HNRNPH2P55795 449 aaKnown RBP7.71□□□□□ -1.17
VPS53-204ENST00000437048 IKBIPQ70UQ0 350 aa7.71□□□□□ -1.17
VPS53-204ENST00000437048 LUZP2Q86TE4 346 aa7.71□□□□□ -1.17
VPS53-204ENST00000437048 NCAPG2Q86XI2 1143 aa7.71□□□□□ -1.17
VPS53-204ENST00000437048 ATP8B3O60423 1300 aa7.71□□□□□ -1.17
VPS53-204ENST00000437048 ARL4CP56559 192 aa7.71□□□□□ -1.17
VPS53-204ENST00000437048 DCAF5Q96JK2 942 aa7.71□□□□□ -1.17
VPS53-204ENST00000437048 KDM4CQ9H3R0 1056 aa7.71□□□□□ -1.17
VPS53-204ENST00000437048 ATP11BQ9Y2G3 1177 aa7.71□□□□□ -1.17
VPS53-204ENST00000437048 CALB1P05937 261 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 UGP2Q16851 508 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 GRAMD1BQ3KR37 738 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 KRT40Q6A162 431 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 ATP7BP35670 1465 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 PPP1R37O75864 691 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 FCGR1AP12314 374 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 ATP2B4P23634 1241 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 RXRGP48443 463 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 MFN1Q8IWA4 741 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 NLRP3Q96P20 1036 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 ANAPC5Q9UJX4 755 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 TYW5A2RUC4 315 aaKnown RBP7.71□□□□□ -1.18
VPS53-204ENST00000437048 H0YC42 278 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 PIK3R2O00459 728 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 KLHL2O95198 593 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 ICA1Q05084 483 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 ITIH4Q14624 930 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 DDX42Q86XP3 938 aaKnown RBP eCLIP7.71□□□□□ -1.18
VPS53-204ENST00000437048 JADE3Q92613 823 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 TCEANC2Q96MN5 208 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 NUDCD1Q96RS6 583 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 MEIS3Q99687 375 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 TUBGCP2Q9BSJ2 902 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 AP3M1Q9Y2T2 418 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 CROCC2H7BZ55 1655 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 JDP2Q8WYK2 163 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 MAGOHBQ96A72 148 aaKnown RBP7.71□□□□□ -1.18
VPS53-204ENST00000437048 FANCEQ9HB96 536 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 NSMCE4AQ9NXX6 385 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 SLC13A4Q9UKG4 626 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 MYO5CQ9NQX4 1742 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 A6NJR5 290 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 SRGAP2CP0DJJ0 459 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 CA4P22748 312 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 TYW1BQ6NUM6 668 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 MTO1Q9Y2Z2 717 aaKnown RBP7.71□□□□□ -1.18
VPS53-204ENST00000437048 ADGRL3Q9HAR2 1447 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 ZRANB2O95218 330 aaKnown RBP eCLIP7.71□□□□□ -1.18
VPS53-204ENST00000437048 FAM107AO95990 144 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 PFKFB1P16118 471 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 CORO7P57737 925 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 TFDP2Q14188 446 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 GNPTABQ3T906 1256 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 ZNF658Q5TYW1 1059 aaPredicted RBP7.71□□□□□ -1.18
VPS53-204ENST00000437048 WAPLQ7Z5K2 1190 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 CADPS2Q86UW7 1296 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 EYA2O00167 538 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 TLR3O15455 904 aaKnown RBP7.71□□□□□ -1.18
VPS53-204ENST00000437048 ATP11CQ8NB49 1132 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 CEP70Q8NHQ1 597 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 CNGB3Q9NQW8 809 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 ABCB11O95342 1321 aa7.71□□□□□ -1.18
VPS53-204ENST00000437048 TMEM191CA6NGB0 347 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 EIF3HO15372 352 aaKnown RBP eCLIP7.7□□□□□ -1.187e-7■□□□□ 9.9
VPS53-204ENST00000437048 TMEM191BP0C7N4 346 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 PAPOLAP51003 745 aaKnown RBP7.7□□□□□ -1.18
VPS53-204ENST00000437048 SGO2Q562F6 1265 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 SPDYCQ5MJ68 293 aa7.7□□□□□ -1.18
VPS53-204ENST00000437048 MRPL46Q9H2W6 279 aaKnown RBP7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms