RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 DNAJC18Q9H819 358 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 RBM12Q9NTZ6 932 aaKnown RBP13.01□□□□□ -0.33
CD44-209ENST00000433892 MYO3BQ8WXR4 1341 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 KLRG2A4D1S0 409 aaPredicted RBP13.01□□□□□ -0.33
CD44-209ENST00000433892 MEIS1O00470 390 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 PALMO75781 387 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 EEF2P13639 858 aaKnown RBP13.01□□□□□ -0.33
CD44-209ENST00000433892 EPS15P42566 896 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 CASP5P51878 434 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 SLC12A3P55017 1021 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 CDC37Q16543 378 aaPredicted RBP13.01□□□□□ -0.33
CD44-209ENST00000433892 HAUS3Q68CZ6 603 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 LRRC31Q6UY01 552 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 FAM133AQ8N9E0 248 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 SYN2Q92777 582 aaPredicted RBP13.01□□□□□ -0.33
CD44-209ENST00000433892 TEKT1Q969V4 418 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 GJD4Q96KN9 370 aaPredicted RBP13.01□□□□□ -0.33
CD44-209ENST00000433892 P2RX7Q99572 595 aaKnown RBP13.01□□□□□ -0.33
CD44-209ENST00000433892 STIM2Q9P246 746 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 ADAMTS1Q9UHI8 967 aa13.01□□□□□ -0.33
CD44-209ENST00000433892 A0A087X0T9 212 aa13□□□□□ -0.33
CD44-209ENST00000433892 FTCDO95954 541 aa13□□□□□ -0.33
CD44-209ENST00000433892 IVLP07476 585 aa13□□□□□ -0.33
CD44-209ENST00000433892 FAM228BP0C875 321 aa13□□□□□ -0.33
CD44-209ENST00000433892 USP11P51784 963 aa13□□□□□ -0.33
CD44-209ENST00000433892 MARSP56192 900 aaKnown RBP13□□□□□ -0.33
CD44-209ENST00000433892 PSMC6P62333 389 aa13□□□□□ -0.33
CD44-209ENST00000433892 PRR16Q569H4 304 aa13□□□□□ -0.33
CD44-209ENST00000433892 ARHGAP27Q6ZUM4 889 aa13□□□□□ -0.33
CD44-209ENST00000433892 CATSPER3Q86XQ3 398 aa13□□□□□ -0.33
CD44-209ENST00000433892 NAP1L4Q99733 375 aaKnown RBP13□□□□□ -0.33
CD44-209ENST00000433892 PCDHAC2Q9Y5I4 1007 aa13□□□□□ -0.33
CD44-209ENST00000433892 MYH4Q9Y623 1939 aa13□□□□□ -0.33
CD44-209ENST00000433892 ARFGEF1Q9Y6D6 1849 aa13□□□□□ -0.33
CD44-209ENST00000433892 G3V3G9 751 aa13□□□□□ -0.33
CD44-209ENST00000433892 MEIS2O14770 477 aa13□□□□□ -0.33
CD44-209ENST00000433892 RPS6KA5O75582 802 aa13□□□□□ -0.33
CD44-209ENST00000433892 NR2F2P24468 414 aa13□□□□□ -0.33
CD44-209ENST00000433892 KLRC1P26715 233 aa13□□□□□ -0.33
CD44-209ENST00000433892 KLHL30Q0D2K2 578 aa13□□□□□ -0.33
CD44-209ENST00000433892 KCNH2Q12809 1159 aa13□□□□□ -0.33
CD44-209ENST00000433892 SLC18A3Q16572 532 aa13□□□□□ -0.33
CD44-209ENST00000433892 KIAA0753Q2KHM9 967 aa13□□□□□ -0.33
CD44-209ENST00000433892 DCAF8Q5TAQ9 597 aa13□□□□□ -0.33
CD44-209ENST00000433892 SLFN13Q68D06 897 aa13□□□□□ -0.33
CD44-209ENST00000433892 C8orf74Q6P047 294 aa13□□□□□ -0.33
CD44-209ENST00000433892 PACSIN1Q9BY11 444 aa13□□□□□ -0.33
CD44-209ENST00000433892 DHX36Q9H2U1 1008 aaKnown RBP13□□□□□ -0.33
CD44-209ENST00000433892 KCNQ5Q9NR82 932 aa13□□□□□ -0.33
CD44-209ENST00000433892 UBR3Q6ZT12 1888 aa13□□□□□ -0.33
CD44-209ENST00000433892 ADAMTSL1Q8N6G6 1762 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 LTBP1Q14766 1721 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 CYP3A7-CYP3A51PA0A087WV96 503 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 UBAP1LF5GYI3 381 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 CETN3O15182 167 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 ACTN1P12814 892 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 CYP3A7P24462 503 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 ARHGAP4P98171 946 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 PABPC4Q13310 644 aaKnown RBP eCLIP12.99□□□□□ -0.33
CD44-209ENST00000433892 NAB2Q15742 525 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 CFAP221Q4G0U5 840 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 HHIPL2Q6UWX4 724 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 SLFN12Q8IYM2 578 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 CCDC17Q96LX7 622 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 GLT8D2Q9H1C3 349 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 PLEKHA4Q9H4M7 779 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 PACSIN2Q9UNF0 486 aaPredicted RBP12.99□□□□□ -0.33
CD44-209ENST00000433892 FRMD3A2A2Y4 597 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 CRKP46108 304 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 SPIRE1Q08AE8 756 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 USH1GQ495M9 461 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 CERKLQ49MI3 558 aaPredicted RBP12.99□□□□□ -0.33
CD44-209ENST00000433892 SEPT12Q8IYM1 358 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 ETNPPLQ8TBG4 499 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 GANQ9H2C0 597 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 POLD4Q9HCU8 107 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 LUC7LQ9NQ29 371 aaKnown RBP12.99□□□□□ -0.33
CD44-209ENST00000433892 TSKSQ9UJT2 592 aa12.99□□□□□ -0.33
CD44-209ENST00000433892 GOLGA6CA6NDK9 693 aa12.98□□□□□ -0.33
CD44-209ENST00000433892 DDTLA6NHG4 134 aaPredicted RBP12.98□□□□□ -0.33
CD44-209ENST00000433892 GOLGA6DP0CG33 693 aa12.98□□□□□ -0.33
CD44-209ENST00000433892 TAL1P17542 331 aaPredicted RBP12.98□□□□□ -0.33
CD44-209ENST00000433892 RNASE9P60153 205 aaKnown RBP12.98□□□□□ -0.33
CD44-209ENST00000433892 GIT2Q14161 759 aa12.98□□□□□ -0.33
CD44-209ENST00000433892 ASIC2Q16515 512 aa12.98□□□□□ -0.33
CD44-209ENST00000433892 TSEN2Q8NCE0 465 aaKnown RBP12.98□□□□□ -0.33
CD44-209ENST00000433892 RUBCNQ92622 972 aa12.98□□□□□ -0.33
CD44-209ENST00000433892 MBOAT7Q96N66 472 aa12.98□□□□□ -0.33
CD44-209ENST00000433892 REEP2Q9BRK0 252 aa12.98□□□□□ -0.33
CD44-209ENST00000433892 EHD4Q9H223 541 aa12.98□□□□□ -0.33
CD44-209ENST00000433892 GOLGA6AQ9NYA3 693 aa12.98□□□□□ -0.33
CD44-209ENST00000433892 AIPL1Q9NZN9 384 aa12.98□□□□□ -0.33
CD44-209ENST00000433892 HDAC9Q9UKV0 1011 aa12.98□□□□□ -0.33
CD44-209ENST00000433892 C10orf71Q711Q0 1435 aa12.98□□□□□ -0.33
CD44-209ENST00000433892 PITPNM2Q9BZ72 1349 aa12.98□□□□□ -0.33
CD44-209ENST00000433892 MYO1CO00159 1063 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 TRIM66O15016 1216 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 GLI1P08151 1106 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 SPATA31C1P0DKV0 1188 aa12.97□□□□□ -0.33
CD44-209ENST00000433892 SLC9A1P19634 815 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms