RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 GOLGA6CA6NDK9 693 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 ZBTB39O15060 712 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 SHOX2O60902 331 aaPredicted RBP7.92□□□□□ -1.14
COL28A1-202ENST00000430711 LRRN2O75325 713 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 RPS6KA4O75676 772 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 GOLGA6DP0CG33 693 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 ECHS1P30084 290 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 COPB2P35606 906 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 GUCY1A3Q02108 690 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 GRAPQ13588 217 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 SPA17Q15506 151 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 SPRED3Q2MJR0 410 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 TSR1Q2NL82 804 aaKnown RBP7.92□□□□□ -1.14
COL28A1-202ENST00000430711 FIGNQ5HY92 759 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 CNNM4Q6P4Q7 775 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 KSR1Q8IVT5 923 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 CYP2W1Q8TAV3 490 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 GRAPLQ8TC17 118 aaPredicted RBP7.92□□□□□ -1.14
COL28A1-202ENST00000430711 IFT81Q8WYA0 676 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 SMARCC1Q92922 1105 aaPredicted RBP7.92□□□□□ -1.14
COL28A1-202ENST00000430711 KRT12Q99456 494 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 SH3GL2Q99962 352 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 DEF6Q9H4E7 631 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 DNAJC18Q9H819 358 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 VIPAS39Q9H9C1 493 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 C6orf50Q9HD87 102 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 ZNHIT6Q9NWK9 470 aaKnown RBP7.92□□□□□ -1.14
COL28A1-202ENST00000430711 GOLGA6AQ9NYA3 693 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 MTMR4Q9NYA4 1195 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 ADAMTS1Q9UHI8 967 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 CCNL1Q9UK58 526 aaPredicted RBP7.92□□□□□ -1.14
COL28A1-202ENST00000430711 FAM184BQ9ULE4 1060 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 NR2E1Q9Y466 385 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 BICDL2A1A5D9 508 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 DCDC2CA8MYV0 355 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 TRAF5O00463 557 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 RAD21O60216 631 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 ZBTB48P10074 688 aaPredicted RBP7.92□□□□□ -1.14
COL28A1-202ENST00000430711 ITGA4P13612 1032 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 CASP4P49662 377 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 LIG3P49916 1009 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 GNGT1P63211 74 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 JAG1P78504 1218 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 CDK17Q00537 523 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 GUCY2DQ02846 1103 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 TPTE2Q6XPS3 522 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 GUF1Q8N442 669 aaKnown RBP7.92□□□□□ -1.14
COL28A1-202ENST00000430711 CALML4Q96GE6 196 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 AK8Q96MA6 479 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 INPP4AQ96PE3 977 aaPredicted RBP7.92□□□□□ -1.14
COL28A1-202ENST00000430711 PYM1Q9BRP8 204 aaKnown RBP7.92□□□□□ -1.14
COL28A1-202ENST00000430711 GANQ9H2C0 597 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 KIAA1024Q9UPX6 916 aa7.92□□□□□ -1.14
COL28A1-202ENST00000430711 SFI1A8K8P3 1242 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 RAD51CO43502 376 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 HEXIM1O94992 359 aaKnown RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 ZBTB7AO95365 584 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 SHMT1P34896 483 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 NOVP48745 357 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 CLK2P49760 499 aaKnown RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 ADCY7P51828 1080 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 SEC24CP53992 1094 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 NAP1L1P55209 391 aaKnown RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 CORO7P57737 925 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 ERVK-9P63128 1117 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 GTF2IP78347 998 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 GABPAQ06546 454 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 RAPGEF1Q13905 1077 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 FBXW10Q5XX13 1052 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 ZNF572Q7Z3I7 529 aaPredicted RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 ZNF571Q7Z3V5 609 aaPredicted RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 KLHL7Q8IXQ5 586 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 TRIM58Q8NG06 486 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 WDR66Q8TBY9 1149 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 NOC3LQ8WTT2 800 aaKnown RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 RNPC3Q96LT9 517 aaKnown RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 CCDC43Q96MW1 224 aaKnown RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 NUP58Q9BVL2 599 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 AP1M1Q9BXS5 423 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 MTFR1LQ9H019 292 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 GBP3Q9H0R5 595 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 KCTD10Q9H3F6 313 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 ZHX3Q9H4I2 956 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 EPB41L5Q9HCM4 733 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 STIM2Q9P246 746 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 IGKV6D-41A0A0C4DH26 115 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 LAD1O00515 517 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 PJA2O43164 708 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 PPFIA4O75335 1185 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 TACC1O75410 805 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 MYBP10242 640 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 GNAQP50148 359 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 PTK2Q05397 1052 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 CKAP4Q07065 602 aaKnown RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 SF3A3Q12874 501 aaKnown RBP eCLIP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 UAP1Q16222 522 aaPredicted RBP7.91□□□□□ -1.14
COL28A1-202ENST00000430711 MAP9Q49MG5 647 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 SOGA3Q5TF21 947 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 C8orf74Q6P047 294 aa7.91□□□□□ -1.14
COL28A1-202ENST00000430711 CACNA2D4Q7Z3S7 1137 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms