RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 HOXA13P31271 388 aaPredicted RBP13.69□□□□□ -0.22
CDH3-202ENST00000429102 PIGOQ8TEQ8 1089 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 AK8Q96MA6 479 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 SELENOSQ9BQE4 189 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 USP54Q70EL1 1684 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 LRRN2O75325 713 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 FGRP09769 529 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 PCP11498 1178 aaKnown RBP13.69□□□□□ -0.22
CDH3-202ENST00000429102 RDXP35241 583 aaKnown RBP13.69□□□□□ -0.22
CDH3-202ENST00000429102 E2F5Q15329 346 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 KRT71Q3SY84 523 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 SPICE1Q8N0Z3 855 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 WDR66Q8TBY9 1149 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 RPGRQ92834 1020 aaKnown RBP13.69□□□□□ -0.22
CDH3-202ENST00000429102 TRIM51Q9BSJ1 452 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 PSTPIP2Q9H939 334 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 SH3GLB2Q9NR46 395 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 CASP4P49662 377 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 SBK1Q52WX2 424 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 LRRC55Q6ZSA7 311 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 PEX26Q7Z412 305 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 CCDC25Q86WR0 208 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 ADAMTS7Q9UKP4 1686 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 PHRF1Q9P1Y6 1649 aaKnown RBP13.68□□□□□ -0.22
CDH3-202ENST00000429102 GCNT3O95395 438 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 SF3B2Q13435 895 aaKnown RBP13.68□□□□□ -0.22
CDH3-202ENST00000429102 HGSNATQ68CP4 663 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 ADGRF4Q8IZF3 695 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 GUF1Q8N442 669 aaKnown RBP13.68□□□□□ -0.22
CDH3-202ENST00000429102 CCDC114Q96M63 670 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 LRRC4CQ9HCJ2 640 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 GRIN2DO15399 1336 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 PHF20L1A8MW92 1017 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 ZBTB39O15060 712 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 CETN3O15182 167 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 TTI1O43156 1089 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 PDHBP11177 359 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 KRT13P13646 458 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 ZNF76P36508 570 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 IFNAR2P48551 515 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 EMBQ6PCB8 327 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 KIRREL3Q8IZU9 778 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 CCT8L2Q96SF2 557 aa13.68□□□□□ -0.22
CDH3-202ENST00000429102 LUC7LQ9NQ29 371 aaKnown RBP13.68□□□□□ -0.22
CDH3-202ENST00000429102 DNAJC17Q9NVM6 304 aaKnown RBP13.68□□□□□ -0.22
CDH3-202ENST00000429102 NUP188Q5SRE5 1749 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 GRID2IPA4D2P6 1211 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 NOL4O94818 638 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 SERPING1P05155 500 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 LDHCP07864 332 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 ERVK-9P63128 1117 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 AADACL2Q6P093 401 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 ALKBH5Q6P6C2 394 aaKnown RBP13.67□□□□□ -0.22
CDH3-202ENST00000429102 C8orf37Q96NL8 207 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 MLXIPLQ9NP71 852 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 HDAC9Q9UKV0 1011 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 ATP6V0A2Q9Y487 856 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 COL18A1P39060 1754 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 SART1O43290 800 aaKnown RBP13.67□□□□□ -0.22
CDH3-202ENST00000429102 ZNF571Q7Z3V5 609 aaPredicted RBP13.67□□□□□ -0.22
CDH3-202ENST00000429102 PHLDB2Q86SQ0 1253 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 MGARPQ8TDB4 240 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 NEUROG2Q9H2A3 272 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 ZNF287Q9HBT7 754 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 OSGEPQ9NPF4 335 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 FBXL5Q9UKA1 691 aa13.67□□□□□ -0.22
CDH3-202ENST00000429102 GCOM1H8Y6P7 765 aaPredicted RBP13.66□□□□□ -0.22
CDH3-202ENST00000429102 MYZAPP0CAP1 466 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 MYBP10242 640 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 TNNC1P63316 161 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 GPSM2P81274 684 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 ZNF804AQ7Z570 1209 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 CPLX4Q7Z7G2 160 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 CCDC65Q8IXS2 484 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 CYP2W1Q8TAV3 490 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 ARHGEF1Q92888 912 aaKnown RBP13.66□□□□□ -0.22
CDH3-202ENST00000429102 PURBQ96QR8 312 aaKnown RBP13.66□□□□□ -0.22
CDH3-202ENST00000429102 EFCC1Q9HA90 598 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 RGL1Q9NZL6 768 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 LAD1O00515 517 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 CYP2J2P51589 502 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 SLC20A2Q08357 652 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 SFR1Q86XK3 245 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 ZNF473Q8WTR7 871 aaKnown RBP13.66□□□□□ -0.22
CDH3-202ENST00000429102 TMOD4Q9NZQ9 345 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 ARMCX3Q9UH62 379 aaPredicted RBP13.66□□□□□ -0.22
CDH3-202ENST00000429102 CCNL1Q9UK58 526 aaPredicted RBP13.66□□□□□ -0.22
CDH3-202ENST00000429102 PRPHP41219 470 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 MAGOHP61326 146 aaKnown RBP13.66□□□□□ -0.22
CDH3-202ENST00000429102 GLG1Q92896 1179 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 MAGOHBQ96A72 148 aaKnown RBP13.66□□□□□ -0.22
CDH3-202ENST00000429102 CUEDC2Q9H467 287 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 CD209Q9NNX6 404 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.66□□□□□ -0.22
CDH3-202ENST00000429102 NR2E1Q9Y466 385 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 PCDHA1Q9Y5I3 950 aa13.66□□□□□ -0.22
CDH3-202ENST00000429102 ALS2Q96Q42 1657 aa13.65□□□□□ -0.22
CDH3-202ENST00000429102 DDX39AO00148 427 aaKnown RBP13.65□□□□□ -0.22
CDH3-202ENST00000429102 EXOC3L4Q17RC7 722 aa13.65□□□□□ -0.22
CDH3-202ENST00000429102 CCDC38Q502W7 563 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms