RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 FOXD4L6Q3SYB3 417 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TTC31Q49AM3 519 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 TTC22Q5TAA0 569 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 FOXD4L3Q6VB84 417 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 SEPT14Q6ZU15 432 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 C1orf210Q8IVY1 113 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 PGBD4Q96DM1 585 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 CCDC138Q96M89 665 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 IPO9Q96P70 1041 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.11□□□□□ -1.917e-12■□□□□ 8.9
CCDC88A-205ENST00000426576 CARD14Q9BXL6 1004 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 INO80BQ9C086 356 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 SENP2Q9HC62 589 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 FANCFQ9NPI8 374 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 CWC25Q9NXE8 425 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 SERGEFQ9UGK8 458 aa3.11□□□□□ -1.91
CCDC88A-205ENST00000426576 FRMPD4Q14CM0 1322 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 FRMPD2Q68DX3 1309 aaPredicted RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 KIAA1107Q9UPP5 1409 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 C1orf167Q5SNV9 1468 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 SYN3O14994 580 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 SEPT4O43236 478 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 LAG3P18627 525 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 TM4SF4P48230 202 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 ITIH3Q06033 890 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 RING1Q06587 406 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 PTPN21Q16825 1174 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 HAUS3Q68CZ6 603 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 CXCL17Q6UXB2 119 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 PDZD4Q76G19 769 aaPredicted RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 COPS6Q7L5N1 327 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 MB21D1Q8N884 522 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 ANKRD20A12PQ8NF67 263 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 ATP6V0A1Q93050 837 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 NXPE3Q969Y0 559 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 RMDN1Q96DB5 314 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 SPON2Q9BUD6 331 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 MRPL9Q9BYD2 267 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 HES7Q9BYE0 225 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 BTBD1Q9H0C5 482 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 RBSNQ9H1K0 784 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 ZFP14Q9HCL3 533 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 SPTLC3Q9NUV7 552 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 ALKBH4Q9NXW9 302 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 SEC63Q9UGP8 760 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 AKT3Q9Y243 479 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 ADCY9O60503 1353 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 SPATA31E1Q6ZUB1 1445 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 NEMP2A6NFY4 417 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 SLC15A5A6NIM6 579 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 ELL2O00472 640 aaPredicted RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 CRYBA1P05813 215 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 CNPP09543 421 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 GP1BBP13224 206 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 LTBRP36941 435 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 ALDH1A3P47895 512 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 CSRP3P50461 194 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 YARSP54577 528 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 KRT33BQ14525 404 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 FOXD4L5Q5VV16 416 aaPredicted RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 PPP4R4Q6NUP7 873 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 ZNF449Q6P9G9 518 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 KDM7AQ6ZMT4 941 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 NFXL1Q6ZNB6 911 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 HERC6Q8IVU3 1022 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 LMNTD2Q8IXW0 634 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 CHCHD4Q8N4Q1 142 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 DIS3LQ8TF46 1054 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 FOXD4L4Q8WXT5 416 aaPredicted RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 IL12RB2Q99665 862 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 USB1Q9BQ65 265 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 IDI2Q9BXS1 227 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 FN3KRPQ9HA64 309 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 CHPF2Q9P2E5 772 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 PCDHGB6Q9Y5F9 930 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 CPED1A4D0V7 1026 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 ZC3H11AO75152 810 aaKnown RBP eCLIP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 LTFP02788 710 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 CYBBP04839 570 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 CD44P16070 742 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 STAT3P40763 770 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 PDE6CP51160 858 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 ITGA7Q13683 1181 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 ARHGEF7Q14155 803 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 FAAH2Q6GMR7 532 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 SLC39A5Q6ZMH5 540 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 METTL23Q86XA0 190 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 KSR1Q8IVT5 923 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 OR10Q1Q8NGQ4 319 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 SMARCC2Q8TAQ2 1214 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 PHOSPHO2Q8TCD6 241 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 DPF1Q92782 380 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 SCLYQ96I15 445 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 MROH8Q9H579 483 aa3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 USP42Q9H9J4 1324 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 NKTRP30414 1462 aaKnown RBP3.1□□□□□ -1.91
CCDC88A-205ENST00000426576 F8P00451 2351 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 PEX12O00623 359 aa3.09□□□□□ -1.91
CCDC88A-205ENST00000426576 AP5Z1O43299 807 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms