RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 UBIAD1Q9Y5Z9 338 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 KAT6AQ92794 2004 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 RFXAPO00287 272 aa13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 MAFGO15525 162 aa13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 ZBTB43O43298 467 aa13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 TCF7P36402 384 aaPredicted RBP13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 ARHGAP4P98171 946 aa13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 GRB10Q13322 594 aa13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 SKIV2LQ15477 1246 aaKnown RBP13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 WWC2Q6AWC2 1192 aa13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 TAF2Q6P1X5 1199 aa13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 DHX32Q7L7V1 743 aaKnown RBP13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 DBF4BQ8NFT6 615 aa13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 ADAMTS19Q8TE59 1207 aa13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 PCDHA6Q9UN73 950 aa13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 PCDHA8Q9Y5H6 950 aa13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 SIP14410 1827 aa13.24□□□□□ -0.29
SQSTM1-203ENST00000422245 TNFRSF10AO00220 468 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 ATP9AO75110 1047 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 HMGB1P09429 215 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 ADCY7P51828 1080 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 NAPAP54920 295 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 ERVK-21P61565 698 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 ADAM17P78536 824 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 EXOSC10Q01780 885 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 PPFIA1Q13136 1202 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 SKAP1Q86WV1 359 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 MYOCDQ8IZQ8 938 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 SEPT1Q8WYJ6 367 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 APBB2Q92870 758 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 TGS1Q96RS0 853 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 GLT8D2Q9H1C3 349 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 JPH1Q9HDC5 661 aaPredicted RBP13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 RIC8AQ9NPQ8 531 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 JADE2Q9NQC1 790 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 ERAP1Q9NZ08 941 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 LMCD1Q9NZU5 365 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 TELO2Q9Y4R8 837 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 INSL6Q9Y581 213 aa13.23□□□□□ -0.29
SQSTM1-203ENST00000422245 COL4A6Q14031 1691 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 KLF18A0A0U1RQI7 1052 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 LINC01553A4QN01 128 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 GOLGA8AA7E2F4 631 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 GOLGA8BA8MQT2 603 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 LPXNO60711 386 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 FOSP01100 380 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 FUT2Q10981 343 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 FAM26DQ5JW98 314 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 FAM117BQ6P1L5 589 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 SPRED2Q7Z698 418 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 RPAINQ86UA6 219 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 RSPH3Q86UC2 560 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 RASEFQ8IZ41 740 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 SP7Q8TDD2 431 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 GDPD5Q8WTR4 605 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 GLG1Q92896 1179 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 TCEANC2Q96MN5 208 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 SMARCAD1Q9H4L7 1026 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 PKD2L1Q9P0L9 805 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 TUBE1Q9UJT0 475 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 BRPF3Q9ULD4 1205 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 COG5Q9UP83 839 aa13.22□□□□□ -0.29
SQSTM1-203ENST00000422245 GSTTP1A0A1W2PQM5 241 aa13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 MBLAC1A4D2B0 266 aaPredicted RBP13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 STXBP3O00186 592 aa13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 RPLP2P05387 115 aaKnown RBP13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 HTRA4P83105 476 aaPredicted RBP13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 FGD1P98174 961 aa13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 AP3B2Q13367 1082 aa13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 GRIK4Q16099 956 aa13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 ADCK5Q3MIX3 580 aa13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 KRT40Q6A162 431 aa13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 TYW1BQ6NUM6 668 aa13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 UHRF1Q96T88 793 aaPredicted RBP13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 MXRA8Q9BRK3 442 aa13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 ANO3Q9BYT9 981 aa13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 IFIH1Q9BYX4 1025 aaKnown RBP13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 KCNH7Q9NS40 1196 aa13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 BARHL2Q9NY43 387 aa13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 SLC9A2Q9UBY0 812 aa13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 MTUS1Q9ULD2 1270 aa13.21□□□□□ -0.29
SQSTM1-203ENST00000422245 BDP1A6H8Y1 2624 aa13.21□□□□□ -0.3
SQSTM1-203ENST00000422245 NFASCO94856 1347 aa13.2□□□□□ -0.3
SQSTM1-203ENST00000422245 CCDC196A0A1B0GTZ2 297 aa13.2□□□□□ -0.3
SQSTM1-203ENST00000422245 MARK3P27448 753 aa13.2□□□□□ -0.3
SQSTM1-203ENST00000422245 CEP55Q53EZ4 464 aa13.2□□□□□ -0.3
SQSTM1-203ENST00000422245 RUFY4Q6ZNE9 571 aa13.2□□□□□ -0.3
SQSTM1-203ENST00000422245 TNPO1Q92973 898 aaKnown RBP13.2□□□□□ -0.3
SQSTM1-203ENST00000422245 YME1L1Q96TA2 773 aa13.2□□□□□ -0.3
SQSTM1-203ENST00000422245 SDF4Q9BRK5 362 aa13.2□□□□□ -0.3
SQSTM1-203ENST00000422245 AZI2Q9H6S1 392 aa13.2□□□□□ -0.3
SQSTM1-203ENST00000422245 V9GY48 417 aaPredicted RBP13.2□□□□□ -0.3
SQSTM1-203ENST00000422245 SMCO2A6NFE2 343 aa13.19□□□□□ -0.3
SQSTM1-203ENST00000422245 RRN3P2A6NIE6 340 aa13.19□□□□□ -0.3
SQSTM1-203ENST00000422245 SREBF1P36956 1147 aa13.19□□□□□ -0.3
SQSTM1-203ENST00000422245 METAP2P50579 478 aaKnown RBP eCLIP13.19□□□□□ -0.3
SQSTM1-203ENST00000422245 TFF2Q03403 129 aa13.19□□□□□ -0.3
SQSTM1-203ENST00000422245 FBXO22Q8NEZ5 403 aa13.19□□□□□ -0.3
SQSTM1-203ENST00000422245 KCNB2Q92953 911 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms