RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 TCP11X2Q5H9J9 407 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 WDR78Q5VTH9 848 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 SHISA4Q96DD7 197 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 FAM167AQ96KS9 214 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 BAG1Q99933 345 aaPredicted RBP9.29□□□□□ -0.92
USP54-203ENST00000418501 MROH8Q9H579 483 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 AZI2Q9H6S1 392 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 ANKEF1Q9NU02 776 aa9.29□□□□□ -0.92
USP54-203ENST00000418501 PPP1R3GB7ZBB8 358 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 BACH1O14867 736 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 OFD1O75665 1012 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 EIF2AK2P19525 551 aaKnown RBP9.28□□□□□ -0.92
USP54-203ENST00000418501 PRCPP42785 496 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 GTF2A2P52657 109 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 KRT83P78385 493 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 COASYQ13057 564 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 PPP2R5AQ15172 486 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 MAN2A1Q16706 1144 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 CDCA5Q96FF9 252 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 FBXO28Q9NVF7 368 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 ASB14A6NK59 587 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 SPA17Q15506 151 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 IL17AQ16552 155 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 NEK11Q8NG66 645 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 KIF18AQ8NI77 898 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 AFG3L2Q9Y4W6 797 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 EIF3DO15371 548 aaKnown RBP eCLIP9.28□□□□□ -0.92
USP54-203ENST00000418501 N4BP1O75113 896 aaKnown RBP9.28□□□□□ -0.92
USP54-203ENST00000418501 NR3C2P08235 984 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 RPS6P62753 249 aaKnown RBP9.28□□□□□ -0.92
USP54-203ENST00000418501 RRP1BQ14684 758 aaKnown RBP9.28□□□□□ -0.92
USP54-203ENST00000418501 EDRF1Q3B7T1 1238 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 CYP26C1Q6V0L0 522 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 FAM178BQ8IXR5 827 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 MCPH1Q8NEM0 835 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 ETNPPLQ8TBG4 499 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 OTUD5Q96G74 571 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 PANX2Q96RD6 677 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 ELP3Q9H9T3 547 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 SLC39A2Q9NP94 309 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 A0A1B0GTH6 734 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 POTEB3A0JP26 581 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 POTECB2RU33 542 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 GCLCP48506 637 aaPredicted RBP9.28□□□□□ -0.92
USP54-203ENST00000418501 BAATQ14032 418 aaPredicted RBP9.28□□□□□ -0.92
USP54-203ENST00000418501 POTEBQ6S5H4 581 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 RIOX2Q8IUF8 465 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 HAS1Q92839 578 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 EDEM3Q9BZQ6 932 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 DEF6Q9H4E7 631 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 PXMP2Q9NR77 195 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 PGAP2Q9UHJ9 254 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 UBIAD1Q9Y5Z9 338 aa9.28□□□□□ -0.92
USP54-203ENST00000418501 SCN9AQ15858 1988 aa9.27□□□□□ -0.92
USP54-203ENST00000418501 SHTN1A0MZ66 631 aa9.27□□□□□ -0.92
USP54-203ENST00000418501 SPDYE5A6NIY4 337 aa9.27□□□□□ -0.92
USP54-203ENST00000418501 USP2O75604 605 aaPredicted RBP9.27□□□□□ -0.92
USP54-203ENST00000418501 EIF3JO75822 258 aaKnown RBP9.27□□□□□ -0.92
USP54-203ENST00000418501 GCNT3O95395 438 aa9.27□□□□□ -0.92
USP54-203ENST00000418501 CCDC175P0C221 793 aa9.27□□□□□ -0.92
USP54-203ENST00000418501 MAPTP10636 758 aaKnown RBP9.27□□□□□ -0.92
USP54-203ENST00000418501 CDAN1Q8IWY9 1227 aa9.27□□□□□ -0.92
USP54-203ENST00000418501 HVCN1Q96D96 273 aa9.27□□□□□ -0.92
USP54-203ENST00000418501 PAGR1Q9BTK6 254 aa9.27□□□□□ -0.92
USP54-203ENST00000418501 DBR1Q9UK59 544 aaKnown RBP9.27□□□□□ -0.92
USP54-203ENST00000418501 AGTPBP1Q9UPW5 1226 aa9.27□□□□□ -0.92
USP54-203ENST00000418501 PCDHA10Q9Y5I2 948 aa9.27□□□□□ -0.92
USP54-203ENST00000418501 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.27□□□□□ -0.92
USP54-203ENST00000418501 MYMKA6NI61 221 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 USO1O60763 962 aaKnown RBP9.27□□□□□ -0.93
USP54-203ENST00000418501 VGLL4Q14135 290 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 NCAPHQ15003 741 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 DYDC2Q96IM9 177 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 CNOT6LQ96LI5 555 aaKnown RBP9.27□□□□□ -0.93
USP54-203ENST00000418501 PNMA5Q96PV4 448 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 PDCD2LQ9BRP1 358 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 TUBGCP2Q9BSJ2 902 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 BHMT2Q9H2M3 363 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 A0A087X0B3 334 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 LGALS16A8MUM7 142 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 PDXKO00764 312 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 TUBB2AQ13885 445 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 KIFAP3Q92845 792 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 TUBB2BQ9BVA1 445 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 C17orf75Q9HAS0 396 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 KCNH7Q9NS40 1196 aa9.27□□□□□ -0.93
USP54-203ENST00000418501 E9PMD0 336 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 KIF5CO60282 957 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 ZNF18P17022 549 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 TUBB4BP68371 445 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 ARHGAP29Q52LW3 1261 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 CATSPER3Q86XQ3 398 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 SHCBP1Q8NEM2 672 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 ACCSQ96QU6 501 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 VPS16Q9H269 839 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 SAMSN1Q9NSI8 373 aaKnown RBP9.26□□□□□ -0.93
USP54-203ENST00000418501 TAB2Q9NYJ8 693 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 PRDM4Q9UKN5 801 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 GDAQ9Y2T3 454 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 FER1L6Q2WGJ9 1857 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms