RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 PLD2O14939 933 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 AXIN1O15169 862 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 CD3EP07766 207 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 VEGFAP15692 232 aaPredicted RBP3.14□□□□□ -1.91
MCF2-204ENST00000414978 ADCY1Q08828 1119 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 C19orf57Q0VDD7 668 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 SCRN1Q12765 414 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 LONRF2Q1L5Z9 754 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 CDCA2Q69YH5 1023 aaPredicted RBP3.14□□□□□ -1.91
MCF2-204ENST00000414978 SPATS2Q86XZ4 545 aaKnown RBP3.14□□□□□ -1.91
MCF2-204ENST00000414978 GRAMD1CQ8IYS0 662 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 PPM1KQ8N3J5 372 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 SYNPOQ8N3V7 929 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 C12orf50Q8NA57 414 aaPredicted RBP3.14□□□□□ -1.91
MCF2-204ENST00000414978 MYRIPQ8NFW9 859 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 CHMP4CQ96CF2 233 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 EMILIN2Q9BXX0 1053 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 IFT22Q9H7X7 185 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 AS3MTQ9HBK9 375 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 C11orf16Q9NQ32 467 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 GFOD1Q9NXC2 390 aa3.14□□□□□ -1.91
MCF2-204ENST00000414978 ANO9A1A5B4 782 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 F5H423 210 aaPredicted RBP3.13□□□□□ -1.91
MCF2-204ENST00000414978 FSCN2O14926 492 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 RHOBTB3O94955 611 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 ARAFP10398 606 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 AMPD1P23109 780 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 GRIK1P39086 918 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 FXR1P51114 621 aaKnown RBP eCLIP3.13□□□□□ -1.91
MCF2-204ENST00000414978 KCTD2Q14681 263 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 IFIT1BQ5T764 474 aaKnown RBP3.13□□□□□ -1.91
MCF2-204ENST00000414978 ICE2Q659A1 982 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 FAM117BQ6P1L5 589 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 CHST15Q7LFX5 561 aaPredicted RBP3.13□□□□□ -1.91
MCF2-204ENST00000414978 MORC1Q86VD1 984 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 SCUBE1Q8IWY4 988 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 DMRTC2Q8IXT2 367 aaPredicted RBP3.13□□□□□ -1.91
MCF2-204ENST00000414978 FIBCD1Q8N539 461 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 BVESQ8NE79 360 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 UBASH3BQ8TF42 649 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 CHTF18Q8WVB6 975 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 GJA10Q969M2 543 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 SCLT1Q96NL6 688 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 MIPEPQ99797 713 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 CENPOQ9BU64 300 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 ZFYVE1Q9HBF4 777 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 VPS45Q9NRW7 570 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 CGGBP1Q9UFW8 167 aaPredicted RBP3.13□□□□□ -1.91
MCF2-204ENST00000414978 USP25Q9UHP3 1055 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 MAPRE3Q9UPY8 281 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 ZKSCAN5Q9Y2L8 839 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 CCDC88AQ3V6T2 1871 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 DNAJC25-GNG10A0A024R161 153 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 MEIS3P2A8K0S8 358 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 H3BRJ5 948 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 DLX3O60479 287 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 FKTNO75072 461 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 CHAF1AQ13111 956 aaPredicted RBP3.13□□□□□ -1.91
MCF2-204ENST00000414978 GFOD2Q3B7J2 385 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 ZNF280DQ6N043 979 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 CRTC3Q6UUV7 619 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 LMBR1LQ6UX01 489 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 SPOCD1Q6ZMY3 1216 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 SRLQ86TD4 932 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 COL23A1Q86Y22 540 aaPredicted RBP3.13□□□□□ -1.91
MCF2-204ENST00000414978 OR2W6PQ8NHA6 318 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 DDX54Q8TDD1 881 aaKnown RBP3.13□□□□□ -1.91
MCF2-204ENST00000414978 RAB24Q969Q5 203 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 NAP1L4Q99733 375 aaKnown RBP3.13□□□□□ -1.91
MCF2-204ENST00000414978 PHF20Q9BVI0 1012 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 PCGF6Q9BYE7 350 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 PIDD1Q9HB75 910 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 PDLIM7Q9NR12 457 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 CDC23Q9UJX2 597 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 PCDHA2Q9Y5H9 948 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 BCORQ6W2J9 1755 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 hCG_1984214I3L0E3 225 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 PCDHGA12O60330 932 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 ATE1O95260 518 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 MAP3K6O95382 1288 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 CLEC2LP0C7M8 214 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 LCP1P13796 627 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 SLC9A1P19634 815 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 MX2P20592 715 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 CAPN3P20807 821 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 YARSP54577 528 aaKnown RBP3.13□□□□□ -1.91
MCF2-204ENST00000414978 HTRA3P83110 453 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 PKDCCQ504Y2 493 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 CPZQ66K79 652 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 CCDC149Q6ZUS6 474 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 RBM12BQ8IXT5 1001 aaKnown RBP3.13□□□□□ -1.91
MCF2-204ENST00000414978 AGGF1Q8N302 714 aaeCLIP3.13□□□□□ -1.91
MCF2-204ENST00000414978 TCP11L2Q8N4U5 519 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 SNRNP27Q8WVK2 155 aaKnown RBP3.13□□□□□ -1.91
MCF2-204ENST00000414978 DDX1Q92499 740 aaKnown RBP3.13□□□□□ -1.91
MCF2-204ENST00000414978 TMEM87BQ96K49 555 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 DHRS1Q96LJ7 313 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 SMYD2Q9NRG4 433 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 PPP1R9AQ9ULJ8 1098 aa3.13□□□□□ -1.91
MCF2-204ENST00000414978 TPX2Q9ULW0 747 aaKnown RBP3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms