RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 MXI1P50539 228 aa13.04□□□□□ -0.32
PTPRF-205ENST00000414879 APBA1Q02410 837 aa13.04□□□□□ -0.32
PTPRF-205ENST00000414879 PPFIA1Q13136 1202 aa13.04□□□□□ -0.32
PTPRF-205ENST00000414879 LONRF3Q496Y0 759 aa13.04□□□□□ -0.32
PTPRF-205ENST00000414879 CCDC25Q86WR0 208 aa13.04□□□□□ -0.32
PTPRF-205ENST00000414879 RAD54LQ92698 747 aa13.04□□□□□ -0.32
PTPRF-205ENST00000414879 AP3M2P53677 418 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 EPHA7Q15375 998 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 CCDC89Q8N998 374 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 CCSER1Q9C0I3 900 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 ZHX1Q9UKY1 873 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-205ENST00000414879 SNAP23O00161 211 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 U2AF2P26368 475 aaKnown RBP eCLIP13.03□□□□□ -0.329e-12■■□□□ 11.6
PTPRF-205ENST00000414879 QARSP47897 775 aaKnown RBP13.03□□□□□ -0.32
PTPRF-205ENST00000414879 COG2Q14746 738 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 LONRF2Q1L5Z9 754 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 ABI1Q8IZP0 508 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 IGDCC4Q8TDY8 1250 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 TSC1Q92574 1164 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 MMS19Q96T76 1030 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 HOMER3Q9NSC5 361 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 MAP3K20Q9NYL2 800 aaKnown RBP13.03□□□□□ -0.32
PTPRF-205ENST00000414879 ANKFY1Q9P2R3 1169 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 NALCNQ8IZF0 1738 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 SALL1Q9NSC2 1324 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 EFCAB8A8MWE9 144 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 AKR1B1P15121 316 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 STAT3P40763 770 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 PSMC5P62195 406 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 KCNB1Q14721 858 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 VSTM4Q8IW00 320 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 AFAP1L2Q8N4X5 818 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 SAMD15Q9P1V8 674 aa13.03□□□□□ -0.32
PTPRF-205ENST00000414879 MRPS9P82933 396 aaKnown RBP13.02□□□□□ -0.32
PTPRF-205ENST00000414879 SPP2Q13103 211 aa13.02□□□□□ -0.32
PTPRF-205ENST00000414879 MED10Q9BTT4 135 aa13.02□□□□□ -0.32
PTPRF-205ENST00000414879 EDEM3Q9BZQ6 932 aa13.02□□□□□ -0.32
PTPRF-205ENST00000414879 BHMT2Q9H2M3 363 aa13.02□□□□□ -0.32
PTPRF-205ENST00000414879 ZNF70Q9UC06 446 aaPredicted RBP13.02□□□□□ -0.32
PTPRF-205ENST00000414879 MYO1FO00160 1098 aa13.02□□□□□ -0.32
PTPRF-205ENST00000414879 CAPN9O14815 690 aa13.02□□□□□ -0.32
PTPRF-205ENST00000414879 SERPING1P05155 500 aa13.02□□□□□ -0.32
PTPRF-205ENST00000414879 CCDC63Q8NA47 563 aa13.02□□□□□ -0.32
PTPRF-205ENST00000414879 KCNB2Q92953 911 aa13.02□□□□□ -0.32
PTPRF-205ENST00000414879 NDST4Q9H3R1 872 aa13.02□□□□□ -0.32
PTPRF-205ENST00000414879 NUB1Q9Y5A7 615 aa13.02□□□□□ -0.32
PTPRF-205ENST00000414879 FCER1AP12319 257 aa13.02□□□□□ -0.33
PTPRF-205ENST00000414879 PHKA2P46019 1235 aa13.02□□□□□ -0.33
PTPRF-205ENST00000414879 LRMPQ12912 555 aa13.02□□□□□ -0.33
PTPRF-205ENST00000414879 GUF1Q8N442 669 aaKnown RBP13.02□□□□□ -0.33
PTPRF-205ENST00000414879 CNOT7Q9UIV1 285 aaKnown RBP13.02□□□□□ -0.33
PTPRF-205ENST00000414879 CDC27P30260 824 aa13.02□□□□□ -0.33
PTPRF-205ENST00000414879 ITIH3Q06033 890 aa13.02□□□□□ -0.33
PTPRF-205ENST00000414879 MTERF2Q49AM1 385 aa13.02□□□□□ -0.33
PTPRF-205ENST00000414879 SPOUT1Q5T280 376 aaKnown RBP13.02□□□□□ -0.33
PTPRF-205ENST00000414879 TRIM50Q86XT4 487 aa13.02□□□□□ -0.33
PTPRF-205ENST00000414879 ELOA2Q8IYF1 753 aaPredicted RBP13.02□□□□□ -0.33
PTPRF-205ENST00000414879 ATRIPQ8WXE1 791 aa13.02□□□□□ -0.33
PTPRF-205ENST00000414879 AIFM3Q96NN9 605 aa13.02□□□□□ -0.33
PTPRF-205ENST00000414879 SMC6Q96SB8 1091 aa13.02□□□□□ -0.33
PTPRF-205ENST00000414879 USTQ9Y2C2 406 aa13.02□□□□□ -0.33
PTPRF-205ENST00000414879 PPP2R3BQ9Y5P8 575 aa13.02□□□□□ -0.33
PTPRF-205ENST00000414879 ERICH4A6NGS2 130 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 GYS1P13807 737 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 CACNB3P54284 484 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 SETDB1Q15047 1291 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 NAALADL2Q58DX5 795 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 CDC42EP5Q6NZY7 148 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 EPSTI1Q96J88 318 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 UIMC1Q96RL1 719 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 TEX13BQ9BXU2 312 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 ST7Q9NRC1 585 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 TOPORSQ9NS56 1045 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-205ENST00000414879 EBAG9O00559 213 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 CTNND1O60716 968 aaKnown RBP13.01□□□□□ -0.33
PTPRF-205ENST00000414879 SLC25A27O95847 323 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 CASP14P31944 242 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 PHBP35232 272 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 UBXN2AP68543 259 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 KRT81Q14533 505 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 ELMSAN1Q6PJG2 1045 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 FMR1NBQ8N0W7 255 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-205ENST00000414879 SELENOSQ9BQE4 189 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 TRIM7Q9C029 511 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 RPF1Q9H9Y2 349 aaKnown RBP13.01□□□□□ -0.33
PTPRF-205ENST00000414879 HOXA13P31271 388 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-205ENST00000414879 IGBP1P78318 339 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 TCP11X2Q5H9J9 407 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 RINT1Q6NUQ1 792 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 ARMCX2Q7L311 632 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 SLC44A5Q8NCS7 719 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 CCHCR1Q8TD31 782 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 PGBD1Q96JS3 809 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 EHD4Q9H223 541 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 VCPKMTQ9H867 229 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 PCDHB4Q9Y5E5 795 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 FKBP1AP62942 108 aaKnown RBP13.01□□□□□ -0.33
PTPRF-205ENST00000414879 ERCC6LQ2NKX8 1250 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 CPLX4Q7Z7G2 160 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 PNMA8AQ86V59 439 aaPredicted RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms