RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 VPS41P49754 854 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 GMPSP49915 693 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-204ENST00000412568 ANKRD40Q6AI12 368 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 UBLCP1Q8WVY7 318 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-204ENST00000412568 RPAP3Q9H6T3 665 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-204ENST00000412568 GCNT4Q9P109 453 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-204ENST00000412568 PHLPP2Q6ZVD8 1323 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 RIC1Q4ADV7 1423 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 OPA1O60313 960 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 WHAMMP3Q1A5X7 153 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 CFAP58Q5T655 872 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 E4F1Q66K89 784 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-204ENST00000412568 DCUN1D2Q6PH85 259 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 TMED8Q6PL24 325 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-204ENST00000412568 SND1Q7KZF4 910 aaKnown RBP eCLIP12.23□□□□□ -0.451e-16■■■□□ 18.3
PTPRF-204ENST00000412568 SRGAP1Q7Z6B7 1085 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 AGBL1Q96MI9 1066 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 PAIP2Q9BPZ3 127 aaKnown RBP12.23□□□□□ -0.45
PTPRF-204ENST00000412568 APOL6Q9BWW8 343 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 TTC26A0AVF1 554 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 NDUFA10O95299 355 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 FTCDO95954 541 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 H2AFZP0C0S5 128 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 PSMC2P35998 433 aaKnown RBP12.23□□□□□ -0.45
PTPRF-204ENST00000412568 H2AFVQ71UI9 128 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 PANX2Q96RD6 677 aa12.23□□□□□ -0.45
PTPRF-204ENST00000412568 NHEJ1Q9H9Q4 299 aaPredicted RBP12.23□□□□□ -0.45
PTPRF-204ENST00000412568 SLC37A4O43826 429 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 AFPP02771 609 aaKnown RBP12.22□□□□□ -0.45
PTPRF-204ENST00000412568 ZBTB33Q86T24 672 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 EPC1Q9H2F5 836 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 GUCY2FP51841 1108 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 TTC31Q49AM3 519 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-204ENST00000412568 RABGGTAQ92696 567 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 IWS1Q96ST2 819 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 ZMYND12Q9H0C1 365 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 DEFB129Q9H1M3 183 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 FZD1Q9UP38 647 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 PALM3A6NDB9 673 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-204ENST00000412568 ACTN4O43707 911 aaKnown RBP12.22□□□□□ -0.45
PTPRF-204ENST00000412568 MOCS3O95396 460 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 MYL1P05976 194 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 HPDP32754 393 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-204ENST00000412568 SEL1L2Q5TEA6 688 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 TRIM58Q8NG06 486 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 ZKSCAN4Q969J2 545 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-204ENST00000412568 SLC10A4Q96EP9 437 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 EIF2AK1Q9BQI3 630 aaKnown RBP12.22□□□□□ -0.45
PTPRF-204ENST00000412568 THAP9Q9H5L6 903 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 GGA3Q9NZ52 723 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 MYMKA6NI61 221 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 ZBED6P86452 979 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 MYL7Q01449 175 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 BRD3Q15059 726 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 MAP3K14Q99558 947 aa12.22□□□□□ -0.45
PTPRF-204ENST00000412568 SLC16A4O15374 487 aa12.21□□□□□ -0.45
PTPRF-204ENST00000412568 NMT1P30419 496 aaKnown RBP12.21□□□□□ -0.45
PTPRF-204ENST00000412568 CLCN6P51797 869 aa12.21□□□□□ -0.45
PTPRF-204ENST00000412568 PADI6Q6TGC4 694 aa12.21□□□□□ -0.45
PTPRF-204ENST00000412568 RBM43Q6ZSC3 357 aaKnown RBP12.21□□□□□ -0.45
PTPRF-204ENST00000412568 SESTD1Q86VW0 696 aa12.21□□□□□ -0.45
PTPRF-204ENST00000412568 TAB3Q8N5C8 712 aaPredicted RBP12.21□□□□□ -0.45
PTPRF-204ENST00000412568 FAM151AQ8WW52 585 aa12.21□□□□□ -0.45
PTPRF-204ENST00000412568 NLRP4Q96MN2 994 aa12.21□□□□□ -0.45
PTPRF-204ENST00000412568 MMS19Q96T76 1030 aa12.21□□□□□ -0.45
PTPRF-204ENST00000412568 NYAP2Q9P242 653 aa12.21□□□□□ -0.45
PTPRF-204ENST00000412568 FEM1BQ9UK73 627 aa12.21□□□□□ -0.45
PTPRF-204ENST00000412568 CFAP221Q4G0U5 840 aa12.21□□□□□ -0.45
PTPRF-204ENST00000412568 CEP55Q53EZ4 464 aa12.21□□□□□ -0.45
PTPRF-204ENST00000412568 LXNQ9BS40 222 aa12.21□□□□□ -0.45
PTPRF-204ENST00000412568 NUCKS1Q9H1E3 243 aaKnown RBP12.21□□□□□ -0.45
PTPRF-204ENST00000412568 MYOZ2Q9NPC6 264 aa12.21□□□□□ -0.45
PTPRF-204ENST00000412568 DDX41Q9UJV9 622 aaKnown RBP12.21□□□□□ -0.45
PTPRF-204ENST00000412568 SERPINA10Q9UK55 444 aa12.21□□□□□ -0.45
PTPRF-204ENST00000412568 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.21□□□□□ -0.457e-6■■■■□ 23.8
PTPRF-204ENST00000412568 SRGAP2O75044 1071 aa12.21□□□□□ -0.46
PTPRF-204ENST00000412568 CXCL9Q07325 125 aa12.21□□□□□ -0.46
PTPRF-204ENST00000412568 DPYDQ12882 1025 aa12.21□□□□□ -0.46
PTPRF-204ENST00000412568 BAATQ14032 418 aaPredicted RBP12.21□□□□□ -0.46
PTPRF-204ENST00000412568 SWSAP1Q6NVH7 229 aa12.21□□□□□ -0.46
PTPRF-204ENST00000412568 CYFIP1Q7L576 1253 aa12.21□□□□□ -0.46
PTPRF-204ENST00000412568 CEP57Q86XR8 500 aa12.21□□□□□ -0.46
PTPRF-204ENST00000412568 IL17RAQ96F46 866 aa12.21□□□□□ -0.46
PTPRF-204ENST00000412568 PARD6BQ9BYG5 372 aa12.21□□□□□ -0.46
PTPRF-204ENST00000412568 UBE2TQ9NPD8 197 aaPredicted RBP12.21□□□□□ -0.46
PTPRF-204ENST00000412568 C1orf112Q9NSG2 853 aa12.21□□□□□ -0.46
PTPRF-204ENST00000412568 NRBP2Q9NSY0 501 aa12.21□□□□□ -0.46
PTPRF-204ENST00000412568 MTUS1Q9ULD2 1270 aa12.21□□□□□ -0.46
PTPRF-204ENST00000412568 DLG5Q8TDM6 1919 aa12.21□□□□□ -0.46
PTPRF-204ENST00000412568 FMN2Q9NZ56 1722 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 LGALS16A8MUM7 142 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 TRIM49P0CI25 452 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 TRIM49CP0CI26 452 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 CCND2P30279 289 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 IREB2P48200 963 aaKnown RBP12.2□□□□□ -0.46
PTPRF-204ENST00000412568 MESDQ14696 234 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 STYK1Q6J9G0 422 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 ZNF354CQ86Y25 554 aa12.2□□□□□ -0.46
PTPRF-204ENST00000412568 KSR1Q8IVT5 923 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 558.3 ms