RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 RRAGAQ7L523 313 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 HEATR3Q7Z4Q2 680 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 FRMD5Q7Z6J6 570 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 CROCCP2Q86T23 111 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 KAT2BQ92831 832 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 CABS1Q96KC9 395 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 PCMTD1Q96MG8 357 aaPredicted RBP6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 FAM129AQ9BZQ8 928 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 KCTD10Q9H3F6 313 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 MCM9Q9NXL9 1143 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 TRAF3IP3Q9Y228 551 aa6.31□□□□□ -1.4
CCDC88A-203ENST00000412148 ZNF536O15090 1300 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 SPATA31A1Q5TZJ5 1347 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 KAT6BQ8WYB5 2073 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 CYP3A7-CYP3A51PA0A087WV96 503 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 GPR75-ASB3A0A0A6YYF3 556 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 IGKV6D-41A0A0C4DH26 115 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 NDUFAB1O14561 156 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 C21orf2O43822 256 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 HEXIM1O94992 359 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 CYP2D6P10635 497 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 CYP3A7P24462 503 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 MLLT3P42568 568 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 DRG2P55039 364 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 HADHBP55084 474 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 EIF3BP55884 814 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 CALCRLQ16602 461 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 KCNV1Q6PIU1 500 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 CACNA2D4Q7Z3S7 1137 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 GSPT2Q8IYD1 628 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 ZNF444Q8N0Y2 327 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 MYCBPAPQ8TBZ2 947 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 RASGRP4Q8TDF6 673 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 TBCKQ8TEA7 893 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 ZNF473Q8WTR7 871 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 MYCBPQ99417 103 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 SUCLA2Q9P2R7 463 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 SEC63Q9UGP8 760 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 STXBP5LQ9Y2K9 1186 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 GAKO14976 1311 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 UNCXA6NJT0 531 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 PES1O00541 588 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 RASSF9O75901 435 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 KIAA0754O94854 1291 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 USP17L8P0C7I0 530 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 PRDX5P30044 214 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 GBP1P32455 592 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 TECP42680 631 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 CARSP49589 748 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 GFPT1Q06210 699 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 COASYQ13057 564 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 SOGA3Q5TF21 947 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 KRT79Q5XKE5 535 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 SYCE1Q8N0S2 351 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 SMCR8Q8TEV9 937 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 TMEM174Q8WUU8 243 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 LMBR1Q8WVP7 490 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 CASKIN2Q8WXE0 1202 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 RNPC3Q96LT9 517 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 RTFDC1Q9BY42 306 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 TXLNGYQ9BZA5 131 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 MMRN2Q9H8L6 949 aa6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 CNOT10Q9H9A5 744 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 FAM207AQ9NSI2 230 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-203ENST00000412148 NCANO14594 1321 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 VGLL3A8MV65 326 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 TBX3O15119 743 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 SLC16A3O15427 465 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 TRAPPC3O43617 180 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 PALMO75781 387 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 KIF4AO95239 1232 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 LDHBP07195 334 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 TM4SF1P30408 202 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 IRX3P78415 501 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 RASSF7Q02833 373 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 LETM2Q2VYF4 491 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 FAM26FQ5R3K3 315 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 EPM2AIP1Q7L775 607 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 IRF2BP2Q7Z5L9 587 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 NLRP14Q86W24 1093 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 DZIP1Q86YF9 867 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 CCDC65Q8IXS2 484 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 OTUD6BQ8N6M0 293 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 DDX12PQ92771 950 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 CELF1Q92879 486 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 CCDC43Q96MW1 224 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 TMEM109Q9BVC6 243 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 CCDC134Q9H6E4 229 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 EPB41L5Q9HCM4 733 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 SLC39A2Q9NP94 309 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 THSD7AQ9UPZ6 1657 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 UBR3Q6ZT12 1888 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 MYH11P35749 1972 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 KLRC1P26715 233 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 ADCY7P51828 1080 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 JAM2P57087 298 aa6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 MCCD1P59942 119 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-203ENST00000412148 POU5F1Q01860 360 aaKnown RBP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms