RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 WFDC3Q8IUB2 231 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 NIM1KQ8IY84 436 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 GPATCH2Q9NW75 528 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 PIM2Q9P1W9 311 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 NDOR1Q9UHB4 597 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 SF3B6Q9Y3B4 125 aaKnown RBP8.25□□□□□ -1.09
USP40-202ENST00000409945 C2orf71A6NGG8 1288 aa8.24□□□□□ -1.09
USP40-202ENST00000409945 KCNQ2O43526 872 aa8.24□□□□□ -1.09
USP40-202ENST00000409945 DNAJC8O75937 253 aaPredicted RBP8.24□□□□□ -1.09
USP40-202ENST00000409945 BMP8BP34820 402 aa8.24□□□□□ -1.09
USP40-202ENST00000409945 AMPD3Q01432 767 aa8.24□□□□□ -1.09
USP40-202ENST00000409945 PRSS36Q5K4E3 855 aa8.24□□□□□ -1.09
USP40-202ENST00000409945 USP53Q70EK8 1073 aa8.24□□□□□ -1.09
USP40-202ENST00000409945 NINJ1Q92982 152 aa8.24□□□□□ -1.09
USP40-202ENST00000409945 METTL22Q9BUU2 404 aaPredicted RBP8.24□□□□□ -1.09
USP40-202ENST00000409945 ASCC2Q9H1I8 757 aaPredicted RBP8.24□□□□□ -1.09
USP40-202ENST00000409945 CLEC1BQ9P126 229 aa8.24□□□□□ -1.09
USP40-202ENST00000409945 FBXL7Q9UJT9 491 aa8.24□□□□□ -1.09
USP40-202ENST00000409945 RREB1Q92766 1687 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 GSNP06396 782 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 PLS3P13797 630 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 FOSL1P15407 271 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 MSMPQ1L6U9 139 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 SULT6B1Q6IMI4 303 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 ARHGAP27Q6ZUM4 889 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 THNSL2Q86YJ6 484 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 ZNF205O95201 554 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 GSTM1P09488 218 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 HOXC12P31275 282 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 SUMO1P63165 101 aaKnown RBP8.23□□□□□ -1.09
USP40-202ENST00000409945 BNIP3Q12983 259 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 PTPROQ16827 1216 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 INF2Q27J81 1249 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 GSTCDQ8NEC7 633 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 NETO1Q8TDF5 533 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 TARS2Q9BW92 718 aaKnown RBP8.23□□□□□ -1.09
USP40-202ENST00000409945 TMOD3Q9NYL9 352 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 DUSP13Q9UII6 198 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 BACE2Q9Y5Z0 518 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 NCAPD2Q15021 1401 aa8.23□□□□□ -1.09
USP40-202ENST00000409945 MSTNO14793 375 aa8.22□□□□□ -1.09
USP40-202ENST00000409945 PLD2O14939 933 aa8.22□□□□□ -1.09
USP40-202ENST00000409945 POU4F1Q01851 419 aa8.22□□□□□ -1.09
USP40-202ENST00000409945 TEKQ02763 1124 aa8.22□□□□□ -1.09
USP40-202ENST00000409945 MAP4K2Q12851 820 aa8.22□□□□□ -1.09
USP40-202ENST00000409945 ZNF530Q6P9A1 599 aaPredicted RBP8.22□□□□□ -1.09
USP40-202ENST00000409945 ABHD17CQ6PCB6 329 aa8.22□□□□□ -1.09
USP40-202ENST00000409945 RPUSD2Q8IZ73 545 aaKnown RBP8.22□□□□□ -1.09
USP40-202ENST00000409945 TMEM52Q8NDY8 209 aa8.22□□□□□ -1.09
USP40-202ENST00000409945 ENOX1Q8TC92 643 aaKnown RBP8.22□□□□□ -1.09
USP40-202ENST00000409945 KCTD13Q8WZ19 329 aa8.22□□□□□ -1.09
USP40-202ENST00000409945 MKNK2Q9HBH9 465 aa8.22□□□□□ -1.09
USP40-202ENST00000409945 SFMBT1Q9UHJ3 866 aa8.22□□□□□ -1.09
USP40-202ENST00000409945 COL4A3BPQ9Y5P4 624 aa8.22□□□□□ -1.09
USP40-202ENST00000409945 PKD1L3Q7Z443 1732 aa8.21□□□□□ -1.09
USP40-202ENST00000409945 DOT1LQ8TEK3 1739 aa8.21□□□□□ -1.09
USP40-202ENST00000409945 BTAF1O14981 1849 aa8.21□□□□□ -1.09
USP40-202ENST00000409945 MYCLP1P12525 358 aaPredicted RBP8.21□□□□□ -1.09
USP40-202ENST00000409945 PHKG2P15735 406 aa8.21□□□□□ -1.09
USP40-202ENST00000409945 IL13P35225 146 aa8.21□□□□□ -1.09
USP40-202ENST00000409945 IFI16Q16666 785 aaKnown RBP8.21□□□□□ -1.09
USP40-202ENST00000409945 CWF19L1Q69YN2 538 aaKnown RBP8.21□□□□□ -1.09
USP40-202ENST00000409945 ZNF574Q6ZN55 896 aaPredicted RBP8.21□□□□□ -1.09
USP40-202ENST00000409945 NFXL1Q6ZNB6 911 aa8.21□□□□□ -1.09
USP40-202ENST00000409945 CREG2Q8IUH2 290 aa8.21□□□□□ -1.09
USP40-202ENST00000409945 PPIL6Q8IXY8 311 aa8.21□□□□□ -1.09
USP40-202ENST00000409945 LINC00116Q8NCU8 138 aa8.21□□□□□ -1.09
USP40-202ENST00000409945 NUP188Q5SRE5 1749 aa8.21□□□□□ -1.1
USP40-202ENST00000409945 CYP27B1O15528 508 aa8.21□□□□□ -1.1
USP40-202ENST00000409945 CLCN7P51798 805 aa8.21□□□□□ -1.1
USP40-202ENST00000409945 SLC15A2Q16348 729 aa8.21□□□□□ -1.1
USP40-202ENST00000409945 TRIM61Q5EBN2 209 aa8.21□□□□□ -1.1
USP40-202ENST00000409945 SPRED2Q7Z698 418 aa8.21□□□□□ -1.1
USP40-202ENST00000409945 CPNE8Q86YQ8 564 aa8.21□□□□□ -1.1
USP40-202ENST00000409945 CRACR2BQ8N4Y2 399 aaPredicted RBP8.21□□□□□ -1.1
USP40-202ENST00000409945 CDADC1Q9BWV3 514 aa8.21□□□□□ -1.1
USP40-202ENST00000409945 SPC25Q9HBM1 224 aa8.21□□□□□ -1.1
USP40-202ENST00000409945 PCDH12Q9NPG4 1184 aa8.21□□□□□ -1.1
USP40-202ENST00000409945 CCNL1Q9UK58 526 aaPredicted RBP8.21□□□□□ -1.1
USP40-202ENST00000409945 PCDHA9Q9Y5H5 950 aa8.21□□□□□ -1.1
USP40-202ENST00000409945 ERVV-2B6SEH9 535 aa8.2□□□□□ -1.1
USP40-202ENST00000409945 DNAJC6O75061 913 aa8.2□□□□□ -1.1
USP40-202ENST00000409945 ZC3H12BQ5HYM0 836 aaKnown RBP8.2□□□□□ -1.1
USP40-202ENST00000409945 JAMLQ86YT9 394 aa8.2□□□□□ -1.1
USP40-202ENST00000409945 MFSD3Q96ES6 412 aa8.2□□□□□ -1.1
USP40-202ENST00000409945 PNNQ9H307 717 aaKnown RBP8.2□□□□□ -1.1
USP40-202ENST00000409945 SPON1Q9HCB6 807 aa8.2□□□□□ -1.1
USP40-202ENST00000409945 TNPO3Q9Y5L0 923 aaKnown RBP8.2□□□□□ -1.1
USP40-202ENST00000409945 SHANK3Q9BYB0 1731 aa8.2□□□□□ -1.1
USP40-202ENST00000409945 PDE8AO60658 829 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 CRTAMO95727 393 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 EFEMP2O95967 443 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 HMOX1P09601 288 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 EGR3Q06889 387 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 RALBP1Q15311 655 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 AOC3Q16853 763 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 PTF1AQ7RTS3 328 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 RNF180Q86T96 592 aa8.19□□□□□ -1.1
USP40-202ENST00000409945 TRIT1Q9H3H1 467 aaKnown RBP8.19□□□□□ -1.1
USP40-202ENST00000409945 PRDM7Q9NQW5 492 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms