RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 ARHGAP25P42331 645 aa22.29■■□□□ 1.16
USP39-204ENST00000409766 ELF2Q15723 593 aa22.29■■□□□ 1.16
USP39-204ENST00000409766 ARHGAP29Q52LW3 1261 aa22.29■■□□□ 1.16
USP39-204ENST00000409766 SLC30A10Q6XR72 485 aa22.29■■□□□ 1.16
USP39-204ENST00000409766 NELFCDQ8IXH7 590 aa22.29■■□□□ 1.16
USP39-204ENST00000409766 BHMT2Q9H2M3 363 aa22.29■■□□□ 1.16
USP39-204ENST00000409766 TUFT1Q9NNX1 390 aa22.29■■□□□ 1.16
USP39-204ENST00000409766 ABL1P00519 1130 aa22.28■■□□□ 1.16
USP39-204ENST00000409766 ZC3H3Q8IXZ2 948 aaKnown RBP22.28■■□□□ 1.16
USP39-204ENST00000409766 ZHX3Q9H4I2 956 aa22.28■■□□□ 1.16
USP39-204ENST00000409766 RABGAP1Q9Y3P9 1069 aa22.28■■□□□ 1.16
USP39-204ENST00000409766 MRFAP1Q9Y605 127 aa22.28■■□□□ 1.16
USP39-204ENST00000409766 FZD9O00144 591 aa22.28■■□□□ 1.16
USP39-204ENST00000409766 SLITRK3O94933 977 aa22.28■■□□□ 1.16
USP39-204ENST00000409766 CASP5P51878 434 aa22.28■■□□□ 1.16
USP39-204ENST00000409766 ZNF397Q8NF99 534 aaPredicted RBP22.28■■□□□ 1.16
USP39-204ENST00000409766 CGNQ9P2M7 1197 aaKnown RBP22.28■■□□□ 1.16
USP39-204ENST00000409766 CNOT7Q9UIV1 285 aaKnown RBP22.28■■□□□ 1.16
USP39-204ENST00000409766 HACL1Q9UJ83 578 aa22.28■■□□□ 1.16
USP39-204ENST00000409766 PRELPP51888 382 aa22.27■■□□□ 1.16
USP39-204ENST00000409766 MARSP56192 900 aaKnown RBP22.27■■□□□ 1.16
USP39-204ENST00000409766 SETQ01105 290 aaPredicted RBP22.27■■□□□ 1.16
USP39-204ENST00000409766 TBC1D10BQ4KMP7 808 aaPredicted RBP22.27■■□□□ 1.16
USP39-204ENST00000409766 EPM2AIP1Q7L775 607 aaPredicted RBP22.27■■□□□ 1.16
USP39-204ENST00000409766 CLEC4DQ8WXI8 215 aa22.27■■□□□ 1.16
USP39-204ENST00000409766 RUSC1Q9BVN2 902 aa22.27■■□□□ 1.16
USP39-204ENST00000409766 ZNHIT6Q9NWK9 470 aaKnown RBP22.27■■□□□ 1.16
USP39-204ENST00000409766 GAS7O60861 476 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 GNA14O95837 355 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 ARP10275 920 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 CDK17Q00537 523 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 RASSF7Q02833 373 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 CTTNQ14247 550 aaKnown RBP22.26■■□□□ 1.15
USP39-204ENST00000409766 ERCC6LQ2NKX8 1250 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 EDRF1Q3B7T1 1238 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 ZNF569Q5MCW4 686 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 PPP4R3CPQ6ZMV5 832 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 SFR1Q86XK3 245 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 HOOK2Q96ED9 719 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 EPHB6O15197 1021 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 ERCC3P19447 782 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 HNRNPH3P31942 346 aaKnown RBP22.26■■□□□ 1.15
USP39-204ENST00000409766 GHRHRQ02643 423 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 DGKZQ13574 1117 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 DYDC2Q96IM9 177 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 ZFP91Q96JP5 570 aaPredicted RBP22.26■■□□□ 1.15
USP39-204ENST00000409766 ZNF577Q9BSK1 485 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 CARD6Q9BX69 1037 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 COL20A1Q9P218 1284 aa22.26■■□□□ 1.15
USP39-204ENST00000409766 RPTORQ8N122 1335 aa22.25■■□□□ 1.15
USP39-204ENST00000409766 NFIBO00712 420 aa22.25■■□□□ 1.15
USP39-204ENST00000409766 CHMP2AO43633 222 aa22.25■■□□□ 1.15
USP39-204ENST00000409766 CCDC40Q4G0X9 1142 aa22.25■■□□□ 1.15
USP39-204ENST00000409766 RINT1Q6NUQ1 792 aa22.25■■□□□ 1.15
USP39-204ENST00000409766 B3GNT9Q6UX72 402 aa22.25■■□□□ 1.15
USP39-204ENST00000409766 MNS1Q8NEH6 495 aa22.25■■□□□ 1.15
USP39-204ENST00000409766 MXRA8Q9BRK3 442 aa22.25■■□□□ 1.15
USP39-204ENST00000409766 WDR11Q9BZH6 1224 aa22.25■■□□□ 1.15
USP39-204ENST00000409766 SLC38A10Q9HBR0 1119 aa22.25■■□□□ 1.15
USP39-204ENST00000409766 FAM207AQ9NSI2 230 aaPredicted RBP22.25■■□□□ 1.15
USP39-204ENST00000409766 MYO1AQ9UBC5 1043 aa22.25■■□□□ 1.15
USP39-204ENST00000409766 PLAGL2Q9UPG8 496 aa22.25■■□□□ 1.15
USP39-204ENST00000409766 GJA3Q9Y6H8 435 aa22.25■■□□□ 1.15
USP39-204ENST00000409766 RSPH10B2B2RC85 870 aa22.24■■□□□ 1.15
USP39-204ENST00000409766 RSPH10BP0C881 870 aa22.24■■□□□ 1.15
USP39-204ENST00000409766 MUTP22033 750 aa22.24■■□□□ 1.15
USP39-204ENST00000409766 HOXD13P35453 343 aa22.24■■□□□ 1.15
USP39-204ENST00000409766 TPH2Q8IWU9 490 aa22.24■■□□□ 1.15
USP39-204ENST00000409766 CCDC170Q8IYT3 715 aa22.24■■□□□ 1.15
USP39-204ENST00000409766 PIGOQ8TEQ8 1089 aa22.24■■□□□ 1.15
USP39-204ENST00000409766 MMRN2Q9H8L6 949 aa22.24■■□□□ 1.15
USP39-204ENST00000409766 NHEJ1Q9H9Q4 299 aaPredicted RBP22.24■■□□□ 1.15
USP39-204ENST00000409766 TADA3O75528 432 aa22.24■■□□□ 1.15
USP39-204ENST00000409766 HERVK_113P62684 666 aa22.24■■□□□ 1.15
USP39-204ENST00000409766 NBPF12Q5TAG4 269 aaPredicted RBP22.24■■□□□ 1.15
USP39-204ENST00000409766 TRIM59Q8IWR1 403 aa22.24■■□□□ 1.15
USP39-204ENST00000409766 UNC45AQ9H3U1 944 aa22.24■■□□□ 1.15
USP39-204ENST00000409766 TRAF3IP3Q9Y228 551 aa22.24■■□□□ 1.15
USP39-204ENST00000409766 EFCAB8A8MWE9 144 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 IPO5O00410 1097 aaKnown RBP22.23■■□□□ 1.15
USP39-204ENST00000409766 ITGB5P18084 799 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 CYLC1P35663 651 aaPredicted RBP22.23■■□□□ 1.15
USP39-204ENST00000409766 ADAM9Q13443 819 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 KNOP1Q1ED39 458 aaKnown RBP22.23■■□□□ 1.15
USP39-204ENST00000409766 KRT26Q7Z3Y9 468 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 MCF2L2Q86YR7 1114 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 SLC35F6Q8N357 371 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 TANGO6Q9C0B7 1094 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 UTRNP46939 3433 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 DOCK1Q14185 1865 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 BCRP11274 1271 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 VCAM1P19320 739 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 KRT83P78385 493 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 KCNMA1Q12791 1236 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 MTMR2Q13614 643 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 BMT2Q1RMZ1 405 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 ZNF662Q6ZS27 426 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 C1orf186Q6ZWK4 172 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 CPXCR1Q8N123 301 aa22.23■■□□□ 1.15
USP39-204ENST00000409766 CCDC155Q8N6L0 562 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms