RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 TKFCQ3LXA3 575 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 TUBGCP2Q9BSJ2 902 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 BHMT2Q9H2M3 363 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 JADE2Q9NQC1 790 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 KCNH7Q9NS40 1196 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 TRMT1Q9NXH9 659 aaKnown RBP21.06■□□□□ 0.96
USP39-202ENST00000409025 HOXC10Q9NYD6 342 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 RIPK3Q9Y572 518 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 CSADQ9Y600 493 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 ARHGAP6O43182 974 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 STX10O60499 249 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 PRKCSHP14314 528 aaPredicted RBP21.06■□□□□ 0.96
USP39-202ENST00000409025 EIF2AK2P19525 551 aaKnown RBP21.06■□□□□ 0.96
USP39-202ENST00000409025 MTIF2P46199 727 aaKnown RBP21.06■□□□□ 0.96
USP39-202ENST00000409025 TRIM14Q14142 442 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 PGM5Q15124 567 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 E4F1Q66K89 784 aaPredicted RBP21.06■□□□□ 0.96
USP39-202ENST00000409025 B3GNT9Q6UX72 402 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 TMEM139Q8IV31 216 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 PANX2Q96RD6 677 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 RMDN3Q96TC7 470 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 ZHX3Q9H4I2 956 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 TBC1D7Q9P0N9 293 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 PCDHA2Q9Y5H9 948 aa21.06■□□□□ 0.96
USP39-202ENST00000409025 MYPNQ86TC9 1320 aa21.05■□□□□ 0.96
USP39-202ENST00000409025 WDR90Q96KV7 1748 aa21.05■□□□□ 0.96
USP39-202ENST00000409025 PES1O00541 588 aaKnown RBP21.05■□□□□ 0.96
USP39-202ENST00000409025 ATP2A1O14983 1001 aa21.05■□□□□ 0.96
USP39-202ENST00000409025 CCP110O43303 1012 aa21.05■□□□□ 0.96
USP39-202ENST00000409025 MRPS9P82933 396 aaKnown RBP21.05■□□□□ 0.96
USP39-202ENST00000409025 DLK2Q6UY11 383 aa21.05■□□□□ 0.96
USP39-202ENST00000409025 MB21D1Q8N884 522 aa21.05■□□□□ 0.96
USP39-202ENST00000409025 GLIS3Q8NEA6 775 aa21.05■□□□□ 0.96
USP39-202ENST00000409025 PXMP2Q9NR77 195 aa21.05■□□□□ 0.96
USP39-202ENST00000409025 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.05■□□□□ 0.96
USP39-202ENST00000409025 ZNF214Q9UL59 606 aaPredicted RBP21.05■□□□□ 0.96
USP39-202ENST00000409025 TNNT1P13805 278 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 IREB2P48200 963 aaKnown RBP21.04■□□□□ 0.96
USP39-202ENST00000409025 DNM2P50570 870 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 ARHGEF16Q5VV41 709 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 CNGA4Q8IV77 575 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 NEK9Q8TD19 979 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 CPLX3Q8WVH0 158 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 REEP2Q9BRK0 252 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 AGO4Q9HCK5 861 aaKnown RBP21.04■□□□□ 0.96
USP39-202ENST00000409025 A0A1W2PQC6 194 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 MYCLP12524 364 aaPredicted RBP21.04■□□□□ 0.96
USP39-202ENST00000409025 MTMR1Q13613 665 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 BAATQ14032 418 aaPredicted RBP21.04■□□□□ 0.96
USP39-202ENST00000409025 TMEM132BQ14DG7 1078 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 CEP135Q66GS9 1140 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 ZNF507Q8TCN5 953 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 CCDC51Q96ER9 411 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 EEF2KMTQ96G04 330 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 NACC1Q96RE7 527 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 PDCD2LQ9BRP1 358 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 TEX13BQ9BXU2 312 aa21.04■□□□□ 0.96
USP39-202ENST00000409025 MFAP3LO75121 409 aa21.03■□□□□ 0.96
USP39-202ENST00000409025 GYPCP04921 128 aa21.03■□□□□ 0.96
USP39-202ENST00000409025 CASP14P31944 242 aa21.03■□□□□ 0.96
USP39-202ENST00000409025 PTPN14Q15678 1187 aa21.03■□□□□ 0.96
USP39-202ENST00000409025 XRRA1Q6P2D8 792 aa21.03■□□□□ 0.96
USP39-202ENST00000409025 USP50Q70EL3 339 aaPredicted RBP21.03■□□□□ 0.96
USP39-202ENST00000409025 MIER3Q7Z3K6 550 aa21.03■□□□□ 0.96
USP39-202ENST00000409025 PIGOQ8TEQ8 1089 aa21.03■□□□□ 0.96
USP39-202ENST00000409025 PRIMPOLQ96LW4 560 aa21.03■□□□□ 0.96
USP39-202ENST00000409025 PKD2L1Q9P0L9 805 aa21.03■□□□□ 0.96
USP39-202ENST00000409025 SPDYE16A6NNV3 312 aaPredicted RBP21.02■□□□□ 0.96
USP39-202ENST00000409025 DDX39AO00148 427 aaKnown RBP21.02■□□□□ 0.96
USP39-202ENST00000409025 TBCAO75347 108 aaKnown RBP21.02■□□□□ 0.96
USP39-202ENST00000409025 RINT1Q6NUQ1 792 aa21.02■□□□□ 0.96
USP39-202ENST00000409025 L3MBTL3Q96JM7 780 aaPredicted RBP21.02■□□□□ 0.96
USP39-202ENST00000409025 NOC4LQ9BVI4 516 aaKnown RBP21.02■□□□□ 0.96
USP39-202ENST00000409025 RUSC1Q9BVN2 902 aa21.02■□□□□ 0.96
USP39-202ENST00000409025 NAA15Q9BXJ9 866 aaKnown RBP21.02■□□□□ 0.96
USP39-202ENST00000409025 TBC1D22BQ9NU19 505 aa21.02■□□□□ 0.96
USP39-202ENST00000409025 B4DLN1 442 aa21.02■□□□□ 0.95
USP39-202ENST00000409025 SOCS7O14512 581 aa21.02■□□□□ 0.95
USP39-202ENST00000409025 NF2P35240 595 aa21.02■□□□□ 0.95
USP39-202ENST00000409025 NYAP1Q6ZVC0 841 aa21.02■□□□□ 0.95
USP39-202ENST00000409025 PPP1R13BQ96KQ4 1090 aa21.02■□□□□ 0.95
USP39-202ENST00000409025 FGFBP2Q9BYJ0 223 aa21.02■□□□□ 0.95
USP39-202ENST00000409025 MAF1Q9H063 256 aa21.02■□□□□ 0.95
USP39-202ENST00000409025 PAPPA2Q9BXP8 1791 aa21.01■□□□□ 0.95
USP39-202ENST00000409025 OTOFQ9HC10 1997 aa21.01■□□□□ 0.95
USP39-202ENST00000409025 DHX15O43143 795 aaKnown RBP21.01■□□□□ 0.95
USP39-202ENST00000409025 FKBP3Q00688 224 aaKnown RBP21.01■□□□□ 0.95
USP39-202ENST00000409025 PLS1Q14651 629 aa21.01■□□□□ 0.95
USP39-202ENST00000409025 ZCWPW2Q504Y3 356 aa21.01■□□□□ 0.95
USP39-202ENST00000409025 SFR1Q86XK3 245 aa21.01■□□□□ 0.95
USP39-202ENST00000409025 SCFD1Q8WVM8 642 aa21.01■□□□□ 0.95
USP39-202ENST00000409025 LXNQ9BS40 222 aa21.01■□□□□ 0.95
USP39-202ENST00000409025 ACAD9Q9H845 621 aa21.01■□□□□ 0.95
USP39-202ENST00000409025 COL4A3BPQ9Y5P4 624 aa21.01■□□□□ 0.95
USP39-202ENST00000409025 GAP43P17677 238 aa21■□□□□ 0.95
USP39-202ENST00000409025 CCND2P30279 289 aa21■□□□□ 0.95
USP39-202ENST00000409025 FXR1P51114 621 aaKnown RBP eCLIP21■□□□□ 0.95
USP39-202ENST00000409025 TBC1D8BQ0IIM8 1120 aa21■□□□□ 0.95
USP39-202ENST00000409025 ITGB3BPQ13352 177 aaPredicted RBP21■□□□□ 0.95
USP39-202ENST00000409025 LRRC55Q6ZSA7 311 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms