RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 AOPEPQ8N6M6 819 aa13.1□□□□□ -0.31
SKA3-203ENST00000400018 MB21D1Q8N884 522 aa13.1□□□□□ -0.31
SKA3-203ENST00000400018 SLC5A5Q92911 643 aa13.1□□□□□ -0.31
SKA3-203ENST00000400018 PARK7Q99497 189 aaKnown RBP13.1□□□□□ -0.31
SKA3-203ENST00000400018 GABRQQ9UN88 632 aa13.1□□□□□ -0.31
SKA3-203ENST00000400018 MYPNQ86TC9 1320 aa13.1□□□□□ -0.31
SKA3-203ENST00000400018 FAM237AA0A1B0GTK4 181 aa13.1□□□□□ -0.31
SKA3-203ENST00000400018 HSDL1Q3SXM5 330 aa13.1□□□□□ -0.31
SKA3-203ENST00000400018 SLC39A2Q9NP94 309 aa13.1□□□□□ -0.31
SKA3-203ENST00000400018 USP20Q9Y2K6 914 aa13.1□□□□□ -0.31
SKA3-203ENST00000400018 TRIM49BA6NDI0 452 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 MYCNP04198 464 aaPredicted RBP13.09□□□□□ -0.31
SKA3-203ENST00000400018 CCDC192P0DO97 292 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 TXLNAP40222 546 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 ADCYAP1R1P41586 468 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 CALML4Q96GE6 196 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 LXNQ9BS40 222 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 IVNS1ABPQ9Y6Y0 642 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 KCNA2P16389 499 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 ZNF165P49910 485 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 ASIC1P78348 528 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 STXBP2Q15833 593 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 SWSAP1Q6NVH7 229 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 RBM43Q6ZSC3 357 aaKnown RBP13.09□□□□□ -0.31
SKA3-203ENST00000400018 ARMCX2Q7L311 632 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 MIER3Q7Z3K6 550 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 LARP4BQ92615 738 aaKnown RBP13.09□□□□□ -0.31
SKA3-203ENST00000400018 RUSC1Q9BVN2 902 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 CCSER1Q9C0I3 900 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 GPRC5CQ9NQ84 441 aa13.09□□□□□ -0.31
SKA3-203ENST00000400018 A0A0G2JMZ2 1700 aa13.08□□□□□ -0.32
SKA3-203ENST00000400018 UBA1P22314 1058 aaKnown RBP13.08□□□□□ -0.32
SKA3-203ENST00000400018 ARSHQ5FYA8 562 aa13.08□□□□□ -0.32
SKA3-203ENST00000400018 SH3RF1Q7Z6J0 888 aa13.08□□□□□ -0.32
SKA3-203ENST00000400018 DDX12PQ92771 950 aa13.08□□□□□ -0.32
SKA3-203ENST00000400018 SMARCE1Q969G3 411 aa13.08□□□□□ -0.32
SKA3-203ENST00000400018 INPP4AQ96PE3 977 aaPredicted RBP13.08□□□□□ -0.32
SKA3-203ENST00000400018 TEKT3Q9BXF9 490 aa13.08□□□□□ -0.32
SKA3-203ENST00000400018 PRDM10Q9NQV6 1147 aa13.08□□□□□ -0.32
SKA3-203ENST00000400018 DNAJC25-GNG10A0A024R161 153 aa13.08□□□□□ -0.32
SKA3-203ENST00000400018 MANSC4A6NHS7 340 aaPredicted RBP13.08□□□□□ -0.32
SKA3-203ENST00000400018 LAD1O00515 517 aa13.08□□□□□ -0.32
SKA3-203ENST00000400018 TLR2O60603 784 aa13.08□□□□□ -0.32
SKA3-203ENST00000400018 FDX1P10109 184 aa13.08□□□□□ -0.32
SKA3-203ENST00000400018 STK4Q13043 487 aa13.08□□□□□ -0.32
SKA3-203ENST00000400018 KMT5BQ4FZB7 885 aa13.08□□□□□ -0.32
SKA3-203ENST00000400018 CCDC60Q8IWA6 550 aaPredicted RBP13.08□□□□□ -0.32
SKA3-203ENST00000400018 ZNF862O60290 1169 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 GGPS1O95749 300 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 PLA2G4BP0C869 781 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 BCRP11274 1271 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 ATP1A3P13637 1013 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 PMS1P54277 932 aaKnown RBP13.07□□□□□ -0.32
SKA3-203ENST00000400018 TRAF1Q13077 416 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 NLRX1Q86UT6 975 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 GPBP1Q86WP2 473 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 SLFN12Q8IYM2 578 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 GABBR1Q9UBS5 961 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 CCDC39Q9UFE4 941 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 C17orf99Q6UX52 265 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 RAD54LQ92698 747 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 FAM20AQ96MK3 541 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 PPP1R16BQ96T49 567 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 HSD17B14Q9BPX1 270 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 EHMT1Q9H9B1 1298 aa13.07□□□□□ -0.32
SKA3-203ENST00000400018 BACH1O14867 736 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 KLRC4O43908 158 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 SLC25A27O95847 323 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 SNAI1O95863 264 aaPredicted RBP13.06□□□□□ -0.32
SKA3-203ENST00000400018 APLP1P51693 650 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 KCNA1Q09470 495 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 FAM110CQ1W6H9 321 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 TRAPPC12Q8WVT3 735 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 TRIM9Q9C026 710 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 RANBP2P49792 3224 aaKnown RBP13.06□□□□□ -0.32
SKA3-203ENST00000400018 RPN1P04843 607 aaKnown RBP13.06□□□□□ -0.32
SKA3-203ENST00000400018 ELNP15502 786 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 CASP5P51878 434 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 GHRHRQ02643 423 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 PDIA5Q14554 519 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 TMEM119Q4V9L6 283 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 PLEKHH3Q7Z736 793 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 DHX40Q8IX18 779 aaKnown RBP13.06□□□□□ -0.32
SKA3-203ENST00000400018 FAM177A1Q8N128 213 aaPredicted RBP13.06□□□□□ -0.32
SKA3-203ENST00000400018 TRIM47Q96LD4 638 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 KBTBD4Q9NVX7 518 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 FBXO40Q9UH90 709 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 TCEAL9Q9UHQ7 104 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 FRMPD4Q14CM0 1322 aa13.06□□□□□ -0.32
SKA3-203ENST00000400018 PSMC4P43686 418 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 ACTR2P61160 394 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 NELFCDQ8IXH7 590 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 MAML3Q96JK9 1138 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 KIFC3Q9BVG8 833 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 MROH8Q9H579 483 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 TUBE1Q9UJT0 475 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 CTNND2Q9UQB3 1225 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 PFASO15067 1338 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 TNPO2O14787 897 aaKnown RBP13.05□□□□□ -0.32
SKA3-203ENST00000400018 USO1O60763 962 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms