RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 PREX2Q70Z35 1606 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 USP17L10C9JJH3 530 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 TUBB2AQ13885 445 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 RNF219Q5W0B1 726 aaPredicted RBP12.31□□□□□ -0.44
TTC28-201ENST00000397906 FOXP4Q8IVH2 680 aaPredicted RBP12.31□□□□□ -0.44
TTC28-201ENST00000397906 TUBB2BQ9BVA1 445 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 SPON1Q9HCB6 807 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 HYOU1Q9Y4L1 999 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 GCFC2P16383 781 aaKnown RBP12.31□□□□□ -0.44
TTC28-201ENST00000397906 ZWILCHQ9H900 591 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 ENC1O14682 589 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 PDE1BQ01064 536 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 MFSD14CQ5VZR4 134 aa12.31□□□□□ -0.44
TTC28-201ENST00000397906 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.31□□□□□ -0.44
TTC28-201ENST00000397906 COPB1P53618 953 aaKnown RBP12.3□□□□□ -0.44
TTC28-201ENST00000397906 CLCN1P35523 988 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 SPATA1Q5VX52 437 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 CLEC4GQ6UXB4 293 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 ARHGEF18Q6ZSZ5 1173 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 CDKL2Q92772 493 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 NEDD4P46934 1319 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 BRD1O95696 1058 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 AK8Q96MA6 479 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 SPATA33Q96N06 139 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 BHMT2Q9H2M3 363 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 CPDO75976 1380 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 ARMCX2Q7L311 632 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 MTMR6Q9Y217 621 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 PPP2R2CQ9Y2T4 447 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 RGS12O14924 1447 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 ZNF233A6NK53 670 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 GARSP41250 739 aaKnown RBP12.3□□□□□ -0.44
TTC28-201ENST00000397906 C10orf67Q8IYJ2 551 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 WDR64B1ANS9 1081 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 VCX3BQ9H321 246 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 PCDHA6Q9UN73 950 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 PCDHA8Q9Y5H6 950 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 H2AFZP0C0S5 128 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 BASP1P80723 227 aaKnown RBP12.3□□□□□ -0.44
TTC28-201ENST00000397906 IQCB1Q15051 598 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 H2AFVQ71UI9 128 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 DPYSL4O14531 572 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 CD209Q9NNX6 404 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 TYW1Q9NV66 732 aaKnown RBP12.3□□□□□ -0.44
TTC28-201ENST00000397906 hCG_1984214I3L0E3 225 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 ZNF713Q8N859 430 aaPredicted RBP12.3□□□□□ -0.44
TTC28-201ENST00000397906 AIFM3Q96NN9 605 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 TMEM106CQ9BVX2 250 aa12.3□□□□□ -0.44
TTC28-201ENST00000397906 THEM5Q8N1Q8 247 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 P2RX5Q93086 422 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 CFAP36Q96G28 342 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 EMILIN3Q9NT22 766 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 TROVE2P10155 538 aaKnown RBP eCLIP12.29□□□□□ -0.44
TTC28-201ENST00000397906 FASTKD5Q7L8L6 764 aaKnown RBP12.29□□□□□ -0.44
TTC28-201ENST00000397906 GBP1P32455 592 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 MAP7Q14244 749 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 RNF217Q8TC41 542 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 URGCPQ8TCY9 931 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 OVOS2A0A0G2JMS6 1433 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 OVOS2A0A0J9YW53 1432 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 OVOS2Q6IE36 1432 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 MCF2LO15068 1137 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 SOX5P35711 763 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 PRPSAP2O60256 369 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 TRIP13Q15645 432 aaPredicted RBP12.29□□□□□ -0.44
TTC28-201ENST00000397906 PCDHB6Q9Y5E3 794 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 FCER1AP12319 257 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 THOC5Q13769 683 aaKnown RBP12.29□□□□□ -0.44
TTC28-201ENST00000397906 TRAPPC10P48553 1259 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 TTLL4Q14679 1199 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 MMEL1Q495T6 779 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 PPP4R4Q6NUP7 873 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 TARBP1Q13395 1621 aaKnown RBP12.29□□□□□ -0.44
TTC28-201ENST00000397906 ZNF157P51786 506 aaPredicted RBP12.29□□□□□ -0.44
TTC28-201ENST00000397906 CEP95Q96GE4 821 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 FEM1BQ9UK73 627 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 ATP1A2P50993 1020 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 RBL2Q08999 1139 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 HS1BP3Q53T59 392 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 TRIML1Q8N9V2 468 aa12.29□□□□□ -0.44
TTC28-201ENST00000397906 INHBAP08476 426 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 SGO2Q562F6 1265 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 PASKQ96RG2 1323 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 KRT3P12035 628 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 MICALL2Q8IY33 904 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 TCP11Q8WWU5 503 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 CCDC51Q96ER9 411 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 MAGEF1Q9HAY2 307 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 PRPF3O43395 683 aaKnown RBP12.28□□□□□ -0.44
TTC28-201ENST00000397906 PCK1P35558 622 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 MTMR2Q13614 643 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 IQCA1LA6NCM1 817 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 F5H423 210 aaPredicted RBP12.28□□□□□ -0.44
TTC28-201ENST00000397906 NEMP1O14524 444 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 ZBTB5O15062 677 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 CPP00450 1065 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 CIITAP33076 1130 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 ZNF568Q3ZCX4 644 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 PRAMEF18Q5VWM3 479 aa12.28□□□□□ -0.44
TTC28-201ENST00000397906 PASD1Q8IV76 773 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms