RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 SLFN12Q8IYM2 578 aa11.71□□□□□ -0.54
CCDC40-204ENST00000397545 HPS3Q969F9 1004 aa11.71□□□□□ -0.54
CCDC40-204ENST00000397545 GCNT4Q9P109 453 aa11.71□□□□□ -0.54
CCDC40-204ENST00000397545 PACSIN2Q9UNF0 486 aaPredicted RBP11.71□□□□□ -0.54
CCDC40-204ENST00000397545 GSG1L2A8MUP6 293 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 SMIM22K7EJ46 135 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 LAD1O00515 517 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 GDF11O95390 407 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 APBA1Q02410 837 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 ITIH3Q06033 890 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 C3orf67Q6ZVT6 689 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 OTUD6AQ7L8S5 288 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 PROCA1Q8NCQ7 364 aaPredicted RBP11.7□□□□□ -0.54
CCDC40-204ENST00000397545 RIN2Q8WYP3 895 aaPredicted RBP11.7□□□□□ -0.54
CCDC40-204ENST00000397545 MPHOSPH6Q99547 160 aaKnown RBP11.7□□□□□ -0.54
CCDC40-204ENST00000397545 MAGEF1Q9HAY2 307 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 TTLL3Q9Y4R7 772 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 LAMB4A4D0S4 1761 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 EIF3CLB5ME19 914 aaKnown RBP11.7□□□□□ -0.54
CCDC40-204ENST00000397545 MYO1FO00160 1098 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 NDC80O14777 642 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 PLA2G4BP0C869 781 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 ZSCAN20P17040 1043 aaPredicted RBP11.7□□□□□ -0.54
CCDC40-204ENST00000397545 TMOD1P28289 359 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 GFPT1Q06210 699 aaPredicted RBP11.7□□□□□ -0.54
CCDC40-204ENST00000397545 LRCH2Q5VUJ6 765 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 EIF3CQ99613 913 aaKnown RBP11.7□□□□□ -0.54
CCDC40-204ENST00000397545 BPIFA3Q9BQP9 254 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 AMNQ9BXJ7 453 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 GLI3P10071 1580 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 PALMO75781 387 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 ATP1A1P05023 1023 aaKnown RBP11.7□□□□□ -0.54
CCDC40-204ENST00000397545 MAN1A1P33908 653 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 PPP2R5CQ13362 524 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 DLGAP5Q15398 846 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 PPP2R5EQ16537 467 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 SEPT14Q6ZU15 432 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 STAG1Q8WVM7 1258 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 THOC1Q96FV9 657 aaKnown RBP11.7□□□□□ -0.54
CCDC40-204ENST00000397545 SERPINB13Q9UIV8 391 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 MRFAP1Q9Y605 127 aa11.7□□□□□ -0.54
CCDC40-204ENST00000397545 LRRC53A6NM62 1247 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 FGFR2P21802 821 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 FXR1P51114 621 aaKnown RBP eCLIP11.69□□□□□ -0.54
CCDC40-204ENST00000397545 TXNRD1Q16881 649 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 GEN1Q17RS7 908 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 ARL6IP4Q66PJ3 421 aaKnown RBP11.69□□□□□ -0.54
CCDC40-204ENST00000397545 SCYL2Q6P3W7 929 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 PTF1AQ7RTS3 328 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 CHURC1Q8WUH1 139 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 ZNF653Q96CK0 615 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 BHMT2Q9H2M3 363 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 SUGCTQ9HAC7 445 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 TRIM10Q9UDY6 481 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 SALL1Q9NSC2 1324 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 H0YIN7 160 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 BAG2O95816 211 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 POLR2MP0CAP2 368 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 ATF2P15336 505 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 SNCBQ16143 134 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 SPATA24Q86W54 205 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.69□□□□□ -0.54
CCDC40-204ENST00000397545 C1orf112Q9NSG2 853 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 STK17AQ9UEE5 414 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 NOP56O00567 594 aaKnown RBP11.69□□□□□ -0.54
CCDC40-204ENST00000397545 TRIM66O15016 1216 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 NTSR2O95665 410 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 HOXA13P31271 388 aaPredicted RBP11.69□□□□□ -0.54
CCDC40-204ENST00000397545 PDE6CP51160 858 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 MYL7Q01449 175 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 ZNF579Q8NAF0 562 aaKnown RBP11.69□□□□□ -0.54
CCDC40-204ENST00000397545 RSAD2Q8WXG1 361 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 POMGNT1Q8WZA1 660 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 KLHL29Q96CT2 875 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 BZW2Q9Y6E2 419 aaKnown RBP11.69□□□□□ -0.54
CCDC40-204ENST00000397545 PASKQ96RG2 1323 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 I3L4J1 428 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 GRIN1Q05586 938 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 ANKRD7Q92527 254 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 CELF1Q92879 486 aaKnown RBP11.69□□□□□ -0.54
CCDC40-204ENST00000397545 MYCBPQ99417 103 aaPredicted RBP11.69□□□□□ -0.54
CCDC40-204ENST00000397545 SNX24Q9Y343 169 aa11.69□□□□□ -0.54
CCDC40-204ENST00000397545 TCRBV5S4A2TA0A5A2 114 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 ZNF185O15231 689 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 DAPK3O43293 454 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 FGGP02679 453 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 SERPING1P05155 500 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 TROVE2P10155 538 aaKnown RBP eCLIP11.68□□□□□ -0.54
CCDC40-204ENST00000397545 MUM1Q2TAK8 710 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 ARHGAP42A6NI28 874 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 FCER1AP12319 257 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 LMNB1P20700 586 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 ATP2B4P23634 1241 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 PSMC2P35998 433 aaKnown RBP11.68□□□□□ -0.54
CCDC40-204ENST00000397545 LIG4P49917 911 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 EMBQ6PCB8 327 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 RAD9BQ6WBX8 426 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 SPATS2Q86XZ4 545 aaKnown RBP11.68□□□□□ -0.54
CCDC40-204ENST00000397545 DEPTORQ8TB45 409 aa11.68□□□□□ -0.54
CCDC40-204ENST00000397545 GLG1Q92896 1179 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms