RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 LARGE1O95461 756 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 CCND2P30279 289 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 EFNA5P52803 228 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 INHBEP58166 350 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 USP17L24Q0WX57 530 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 SPECC1Q5M775 1068 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 AXDND1Q5T1B0 1012 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-203ENST00000395896 NCAPH2Q6IBW4 605 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 NIPA1Q7RTP0 329 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 RHOT2Q8IXI1 618 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 KIAA1683Q9H0B3 1180 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 RAB17Q9H0T7 212 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 C2orf40Q9H1Z8 148 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 ADARB2Q9NS39 739 aaKnown RBP3.71□□□□□ -1.82
VPS13C-203ENST00000395896 TOPORSQ9NS56 1045 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-203ENST00000395896 EMILIN3Q9NT22 766 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 CNOT7Q9UIV1 285 aaKnown RBP3.71□□□□□ -1.82
VPS13C-203ENST00000395896 STRNO43815 780 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 PPFIA3O75145 1194 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 GOLGA8HP0CJ92 632 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 CFAP58Q5T655 872 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 SPICE1Q8N0Z3 855 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 NDST4Q9H3R1 872 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 TRPC6Q9Y210 931 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 SBF2Q86WG5 1849 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 STXBP3O00186 592 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 CXCL11O14625 94 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 ATP2A2P16615 1042 aaKnown RBP3.71□□□□□ -1.82
VPS13C-203ENST00000395896 SEPT7Q16181 437 aaKnown RBP3.71□□□□□ -1.82
VPS13C-203ENST00000395896 ERO1BQ86YB8 467 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 RUBCNQ92622 972 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 SECISBP2LQ93073 1101 aaKnown RBP3.71□□□□□ -1.82
VPS13C-203ENST00000395896 NAPGQ99747 312 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-203ENST00000395896 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.71□□□□□ -1.82
VPS13C-203ENST00000395896 LTBP3Q9NS15 1303 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 ATF7P17544 494 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-203ENST00000395896 VSTM4Q8IW00 320 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 SRBD1Q8N5C6 995 aaKnown RBP3.71□□□□□ -1.82
VPS13C-203ENST00000395896 C2orf69Q8N8R5 385 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 MYRIPQ8NFW9 859 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 RABGGTAQ92696 567 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 HAUS1Q96CS2 278 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 MROH8Q9H579 483 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 MRPL47Q9HD33 250 aaKnown RBP3.71□□□□□ -1.82
VPS13C-203ENST00000395896 ZHX2Q9Y6X8 837 aa3.71□□□□□ -1.82
VPS13C-203ENST00000395896 TUBGCP6Q96RT7 1819 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 SSU72P8A0A1W2PR75 194 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 PLA2G4BP0C869 781 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 PSMC5P62195 406 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 KIF22Q14807 665 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 EPHA7Q15375 998 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 CDC42EP5Q6NZY7 148 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 XXYLT1Q8NBI6 393 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.7□□□□□ -1.82
VPS13C-203ENST00000395896 CCHCR1Q8TD31 782 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 CNOT6LQ96LI5 555 aaKnown RBP3.7□□□□□ -1.82
VPS13C-203ENST00000395896 JPH1Q9HDC5 661 aaPredicted RBP3.7□□□□□ -1.82
VPS13C-203ENST00000395896 DOCK2Q92608 1830 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 DOCK3Q8IZD9 2030 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 MAGEB2O15479 319 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 PLEKHA8P1O95397 391 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 TBXAS1P24557 533 aaPredicted RBP3.7□□□□□ -1.82
VPS13C-203ENST00000395896 STX17P56962 302 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 DACT2Q5SW24 774 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 FAM43BQ6ZT52 329 aaPredicted RBP3.7□□□□□ -1.82
VPS13C-203ENST00000395896 CACTINQ8WUQ7 758 aaKnown RBP3.7□□□□□ -1.82
VPS13C-203ENST00000395896 CPLX3Q8WVH0 158 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 PGBD1Q96JS3 809 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 LIG4P49917 911 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 KARSQ15046 597 aaKnown RBP3.7□□□□□ -1.82
VPS13C-203ENST00000395896 FRMPD2Q68DX3 1309 aaPredicted RBP3.7□□□□□ -1.82
VPS13C-203ENST00000395896 IFT20Q8IY31 132 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 CMTR1Q8N1G2 835 aaKnown RBP3.7□□□□□ -1.82
VPS13C-203ENST00000395896 CNKSR2Q8WXI2 1034 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 POLR3CQ9BUI4 534 aaPredicted RBP3.7□□□□□ -1.82
VPS13C-203ENST00000395896 VPS16Q9H269 839 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 BHMT2Q9H2M3 363 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 TYW1Q9NV66 732 aaKnown RBP3.7□□□□□ -1.82
VPS13C-203ENST00000395896 RP1P56715 2156 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 ANO9A1A5B4 782 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 CCDC169A6NNP5 214 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 FCER1AP12319 257 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 STAT3P40763 770 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 GCLCP48506 637 aaPredicted RBP3.7□□□□□ -1.82
VPS13C-203ENST00000395896 CCDC14Q49A88 953 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 XKR9Q5GH70 373 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 FRMD5Q7Z6J6 570 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 KRT222Q8N1A0 295 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 POMGNT1Q8WZA1 660 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 SLC10A4Q96EP9 437 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 ANKEF1Q9NU02 776 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 PCDHA6Q9UN73 950 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 PCDHA8Q9Y5H6 950 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 GSTTP1A0A1W2PQM5 241 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 ASB14A6NK59 587 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 ICAM1P05362 532 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 XKR3Q5GH77 459 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 TATDN1Q6P1N9 297 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 PDXDC2PQ6P474 469 aa3.7□□□□□ -1.82
VPS13C-203ENST00000395896 PRR12Q9ULL5 1215 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms