RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 HERC4Q5GLZ8 1057 aaPredicted RBP13.97□□□□□ -0.17
SHMT1-205ENST00000395684 HYIQ5T013 277 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 GANQ9H2C0 597 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 LUC7LQ9NQ29 371 aaKnown RBP13.97□□□□□ -0.17
SHMT1-205ENST00000395684 BMP2KQ9NSY1 1161 aaPredicted RBP13.97□□□□□ -0.17
SHMT1-205ENST00000395684 RAD51CO43502 376 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 MARCH6O60337 910 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 UFL1O94874 794 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 GNA14O95837 355 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 PLA2G4BP0C869 781 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 IL1R1P14778 569 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 SLC16A2P36021 539 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 LIG3P49916 1009 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 ADAM9Q13443 819 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 MREGQ8N565 214 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 RNPC3Q96LT9 517 aaKnown RBP13.97□□□□□ -0.17
SHMT1-205ENST00000395684 FAM107BQ9H098 131 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 EMILIN3Q9NT22 766 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 IGKV6D-41A0A0C4DH26 115 aa13.96□□□□□ -0.17
SHMT1-205ENST00000395684 POTEB3A0JP26 581 aa13.96□□□□□ -0.17
SHMT1-205ENST00000395684 POTECB2RU33 542 aa13.96□□□□□ -0.17
SHMT1-205ENST00000395684 ACTN1P12814 892 aa13.96□□□□□ -0.17
SHMT1-205ENST00000395684 GABPAQ06546 454 aa13.96□□□□□ -0.17
SHMT1-205ENST00000395684 ZNF543Q08ER8 600 aa13.96□□□□□ -0.17
SHMT1-205ENST00000395684 KCNH2Q12809 1159 aa13.96□□□□□ -0.17
SHMT1-205ENST00000395684 PICALMQ13492 652 aa13.96□□□□□ -0.17
SHMT1-205ENST00000395684 DPY19L2P1Q6NXN4 242 aa13.96□□□□□ -0.17
SHMT1-205ENST00000395684 POTEBQ6S5H4 581 aa13.96□□□□□ -0.17
SHMT1-205ENST00000395684 DPP8Q6V1X1 898 aaPredicted RBP13.96□□□□□ -0.17
SHMT1-205ENST00000395684 DNAAF5Q86Y56 855 aa13.96□□□□□ -0.17
SHMT1-205ENST00000395684 USP38Q8NB14 1042 aa13.96□□□□□ -0.17
SHMT1-205ENST00000395684 TMEM59LQ9UK28 342 aa13.96□□□□□ -0.17
SHMT1-205ENST00000395684 GAKO14976 1311 aa13.96□□□□□ -0.18
SHMT1-205ENST00000395684 CYP11B2P19099 503 aa13.96□□□□□ -0.18
SHMT1-205ENST00000395684 PTK2Q05397 1052 aa13.96□□□□□ -0.18
SHMT1-205ENST00000395684 GPBP1Q86WP2 473 aa13.96□□□□□ -0.18
SHMT1-205ENST00000395684 KLHL7Q8IXQ5 586 aa13.96□□□□□ -0.18
SHMT1-205ENST00000395684 CCDC65Q8IXS2 484 aa13.96□□□□□ -0.18
SHMT1-205ENST00000395684 KAT2BQ92831 832 aa13.96□□□□□ -0.18
SHMT1-205ENST00000395684 CUL5Q93034 780 aa13.96□□□□□ -0.18
SHMT1-205ENST00000395684 NT5C3AQ9H0P0 336 aa13.96□□□□□ -0.18
SHMT1-205ENST00000395684 GOLPH3Q9H4A6 298 aa13.96□□□□□ -0.18
SHMT1-205ENST00000395684 PLIN4Q96Q06 1357 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 NDUFAB1O14561 156 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 ZEB2O60315 1214 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 MYBP10242 640 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 GUCY1A3Q02108 690 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 ASIC2Q16515 512 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 ARSHQ5FYA8 562 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 PPP1R18Q6NYC8 613 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 KDM7AQ6ZMT4 941 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 IRF2BP2Q7Z5L9 587 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 CD302Q8IX05 232 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 ZC3H3Q8IXZ2 948 aaKnown RBP13.95□□□□□ -0.18
SHMT1-205ENST00000395684 USP17L10C9JJH3 530 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 ERLIN2O94905 339 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 SLC9A1P19634 815 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 CASP5P51878 434 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 MRPL12P52815 198 aaKnown RBP13.95□□□□□ -0.18
SHMT1-205ENST00000395684 SF3B2Q13435 895 aaKnown RBP13.95□□□□□ -0.18
SHMT1-205ENST00000395684 ICE2Q659A1 982 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 ZNF571Q7Z3V5 609 aaPredicted RBP13.95□□□□□ -0.18
SHMT1-205ENST00000395684 PSTPIP2Q9H939 334 aa13.95□□□□□ -0.18
SHMT1-205ENST00000395684 AHDC1Q5TGY3 1603 aaPredicted RBP13.94□□□□□ -0.18
SHMT1-205ENST00000395684 A6NNZ2 444 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 USP17L15C9J2P7 530 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 USP17L13C9JLJ4 530 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 USP17L11C9JVI0 530 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 USP17L18D6R9N7 530 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 USP17L22D6RA61 530 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 USP17L17D6RBQ6 530 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 USP17L19D6RCP7 530 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 USP17L20D6RJB6 530 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 KCNK3O14649 394 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 USP17L24Q0WX57 530 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 TUBB8Q3ZCM7 444 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 EMC10Q5UCC4 262 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 USP17L6PQ6QN14 398 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 ATF5Q9Y2D1 282 aaPredicted RBP13.94□□□□□ -0.18
SHMT1-205ENST00000395684 DAGLAQ9Y4D2 1042 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 KDM3AQ9Y4C1 1321 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 MED24O75448 989 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 TTLL1O95922 423 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 NR2F2P24468 414 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 ECHS1P30084 290 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 LSP1P33241 339 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 STAT3P40763 770 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 ERVK-9P63128 1117 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 PTPROQ16827 1216 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 KCTD19Q17RG1 926 aaPredicted RBP13.94□□□□□ -0.18
SHMT1-205ENST00000395684 KCTD1Q719H9 257 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 CNBD1Q8NA66 436 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 WHAMMQ8TF30 809 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 ZHX3Q9H4I2 956 aa13.94□□□□□ -0.18
SHMT1-205ENST00000395684 CCNL1Q9UK58 526 aaPredicted RBP13.94□□□□□ -0.18
SHMT1-205ENST00000395684 FRMD3A2A2Y4 597 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 CLSTN1O94985 981 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 GCFC2P16383 781 aaKnown RBP13.93□□□□□ -0.18
SHMT1-205ENST00000395684 NR1D1P20393 614 aa13.93□□□□□ -0.18
SHMT1-205ENST00000395684 EPS15P42566 896 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms