RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TTC26A0AVF1 554 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 ZNF185O15231 689 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 CYTH3O43739 400 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 TNNI2P48788 182 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 C2orf54Q08AI8 447 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 WDR59Q6PJI9 974 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 TSEN2Q8NCE0 465 aaKnown RBP12.28□□□□□ -0.44
CUX1-204ENST00000393824 ZNF473Q8WTR7 871 aaKnown RBP12.28□□□□□ -0.44
CUX1-204ENST00000393824 RWDD2AQ9UIY3 292 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 ZBTB21Q9ULJ3 1066 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 FRMPD2Q68DX3 1309 aaPredicted RBP12.27□□□□□ -0.44
CUX1-204ENST00000393824 CENPFP49454 3210 aa12.27□□□□□ -0.44
CUX1-204ENST00000393824 KLHL33A6NCF5 533 aa12.27□□□□□ -0.44
CUX1-204ENST00000393824 TBC1D12O60347 775 aa12.27□□□□□ -0.44
CUX1-204ENST00000393824 CAP2P40123 477 aa12.27□□□□□ -0.44
CUX1-204ENST00000393824 MEA1Q16626 185 aa12.27□□□□□ -0.44
CUX1-204ENST00000393824 MOB2Q70IA6 237 aa12.27□□□□□ -0.44
CUX1-204ENST00000393824 IQCKQ8N0W5 287 aa12.27□□□□□ -0.44
CUX1-204ENST00000393824 HDAC7Q8WUI4 952 aa12.27□□□□□ -0.44
CUX1-204ENST00000393824 LRRC1Q9BTT6 524 aa12.27□□□□□ -0.44
CUX1-204ENST00000393824 RNF26Q9BY78 433 aaPredicted RBP12.27□□□□□ -0.44
CUX1-204ENST00000393824 ACTR5Q9H9F9 607 aaPredicted RBP12.27□□□□□ -0.44
CUX1-204ENST00000393824 SLC40A1Q9NP59 571 aa12.27□□□□□ -0.44
CUX1-204ENST00000393824 CAPN11Q9UMQ6 739 aa12.27□□□□□ -0.44
CUX1-204ENST00000393824 KCNJ14Q9UNX9 436 aa12.27□□□□□ -0.44
CUX1-204ENST00000393824 LUC7L2Q9Y383 392 aaKnown RBP12.27□□□□□ -0.44
CUX1-204ENST00000393824 A0A087X0B3 334 aa12.27□□□□□ -0.45
CUX1-204ENST00000393824 A0A1W2PQC6 194 aa12.27□□□□□ -0.45
CUX1-204ENST00000393824 PPP1R37O75864 691 aa12.27□□□□□ -0.45
CUX1-204ENST00000393824 TTLL1O95922 423 aa12.27□□□□□ -0.45
CUX1-204ENST00000393824 PDHBP11177 359 aa12.27□□□□□ -0.45
CUX1-204ENST00000393824 AFMP43652 599 aa12.27□□□□□ -0.45
CUX1-204ENST00000393824 CDR1P51861 262 aa12.27□□□□□ -0.45
CUX1-204ENST00000393824 ICA1Q05084 483 aa12.27□□□□□ -0.45
CUX1-204ENST00000393824 PTGISQ16647 500 aa12.27□□□□□ -0.45
CUX1-204ENST00000393824 KRT26Q7Z3Y9 468 aa12.27□□□□□ -0.45
CUX1-204ENST00000393824 APOBEC3FQ8IUX4 373 aaKnown RBP12.27□□□□□ -0.45
CUX1-204ENST00000393824 SMYD4Q8IYR2 804 aaPredicted RBP12.27□□□□□ -0.45
CUX1-204ENST00000393824 SPICE1Q8N0Z3 855 aa12.27□□□□□ -0.45
CUX1-204ENST00000393824 RNPC3Q96LT9 517 aaKnown RBP12.27□□□□□ -0.45
CUX1-204ENST00000393824 CCDC17Q96LX7 622 aa12.27□□□□□ -0.45
CUX1-204ENST00000393824 NMRK2Q9NPI5 230 aa12.27□□□□□ -0.45
CUX1-204ENST00000393824 SNX12Q9UMY4 172 aa12.27□□□□□ -0.45
CUX1-204ENST00000393824 KCNJ18B7U540 433 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 ADAMTS3O15072 1205 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 DDAH1O94760 285 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 FAM107AO95990 144 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 IDEP14735 1019 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 KCNJ12Q14500 433 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 ZKSCAN8Q15776 578 aaPredicted RBP12.26□□□□□ -0.45
CUX1-204ENST00000393824 TSR1Q2NL82 804 aaKnown RBP12.26□□□□□ -0.45
CUX1-204ENST00000393824 MAP1SQ66K74 1059 aaPredicted RBP12.26□□□□□ -0.45
CUX1-204ENST00000393824 TTBK2Q6IQ55 1244 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 TMEM179Q6ZVK1 233 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 TMTC3Q6ZXV5 915 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 KIAA1328Q86T90 577 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 FMNL3Q8IVF7 1028 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 CD302Q8IX05 232 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 SPATA4Q8NEY3 305 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 MYCBPAPQ8TBZ2 947 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 ZIM3Q96PE6 472 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 CCT8L2Q96SF2 557 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 LACRTQ9GZZ8 138 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 RRAGCQ9HB90 399 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 CABP5Q9NP86 173 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 JADE2Q9NQC1 790 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 TAB2Q9NYJ8 693 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 CTNND2Q9UQB3 1225 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 TRAF5O00463 557 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 RAD21O60216 631 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 RTN2O75298 545 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 CYLC1P35663 651 aaPredicted RBP12.26□□□□□ -0.45
CUX1-204ENST00000393824 UBXN1Q04323 297 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 SNCBQ16143 134 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 PKN1Q16512 942 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 KCTD1Q719H9 257 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 NLRP14Q86W24 1093 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 CCDC170Q8IYT3 715 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 C3orf20Q8ND61 904 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 UBA5Q9GZZ9 404 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 STIM2Q9P246 746 aa12.26□□□□□ -0.45
CUX1-204ENST00000393824 DDX20Q9UHI6 824 aaKnown RBP12.26□□□□□ -0.45
CUX1-204ENST00000393824 CNTNAP5Q8WYK1 1306 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 PALM3A6NDB9 673 aaPredicted RBP12.25□□□□□ -0.45
CUX1-204ENST00000393824 RCCD1A6NED2 376 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 ATP1A2P50993 1020 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 SARNPP82979 210 aaKnown RBP12.25□□□□□ -0.45
CUX1-204ENST00000393824 NR5A1Q13285 461 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 GRM4Q14833 912 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 ZYXQ15942 572 aaKnown RBP12.25□□□□□ -0.45
CUX1-204ENST00000393824 USP50Q70EL3 339 aaPredicted RBP12.25□□□□□ -0.45
CUX1-204ENST00000393824 MB21D1Q8N884 522 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 CALR3Q96L12 384 aaKnown RBP12.25□□□□□ -0.45
CUX1-204ENST00000393824 WRNIP1Q96S55 665 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 KANSL2Q9H9L4 492 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 RMND1Q9NWS8 449 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 TFR2Q9UP52 801 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 V9GY48 417 aaPredicted RBP12.25□□□□□ -0.45
CUX1-204ENST00000393824 GOLGA6L7A0A1B0GV03 622 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 SNHG28P0DPA3 235 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms