RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SCINQ9Y6U3 715 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 EXOC1LA0A1B0GW35 172 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 EIF3BP55884 814 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 KRT39Q6A163 491 aa13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 HEXIM2Q96MH2 286 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-204ENST00000389857 PYGBP11216 843 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 ARPP19P56211 112 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 FKBP3Q00688 224 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 ITM2BQ9Y287 266 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 C2orf54Q08AI8 447 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 OR6B2Q6IFH4 312 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 CENPUQ71F23 418 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 CDC26Q8NHZ8 85 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 THAP9Q9H5L6 903 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 CFAP74Q9C0B2 1584 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 H3BRJ5 948 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 SYF2O95926 243 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 TAF11Q15544 211 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 KIF19Q2TAC6 998 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 TAF1BQ53T94 588 aaPredicted RBP13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 TRIM59Q8IWR1 403 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 MORC4Q8TE76 937 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 EDC3Q96F86 508 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 PARVGQ9HBI0 331 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 GCC2Q8IWJ2 1684 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 C1orf228Q6PIY5 440 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 CALR3Q96L12 384 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 CENPKQ9BS16 269 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 MMTAG2Q9BU76 263 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 TCOF1Q13428 1488 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 ABCC4O15439 1325 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 M0R2C6 588 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 OCRLQ01968 901 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 ZKSCAN8Q15776 578 aaPredicted RBP13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 Q3C1V9 767 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 GANCQ8TET4 914 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 NEUROG2Q9H2A3 272 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 IKBKBO14920 756 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 SKIP12755 728 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 PEX19P40855 299 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 SYDE2Q5VT97 1194 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 ALS2CLQ60I27 953 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 ZBTB33Q86T24 672 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 ABCF3Q9NUQ8 709 aa13.78□□□□□ -0.2
CCDC88C-204ENST00000389857 GFPT2O94808 682 aa13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 ANGPTL8Q6UXH0 198 aa13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 DIS3Q9Y2L1 958 aaKnown RBP13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 ZBED1O96006 694 aa13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 PHKG2P15735 406 aa13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 DRP2Q13474 957 aa13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 SLC39A14Q15043 492 aa13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 NLGN1Q8N2Q7 840 aa13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 FAM133AQ8N9E0 248 aa13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 PIP4K2CQ8TBX8 421 aa13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 SNX19Q92543 992 aa13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 ORAI2Q96SN7 254 aa13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 PCIF1Q9H4Z3 704 aa13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 KANSL2Q9H9L4 492 aa13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 ZNF608Q9ULD9 1512 aaPredicted RBP13.77□□□□□ -0.2
CCDC88C-204ENST00000389857 MAPK13O15264 365 aa13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 TMCC1O94876 653 aa13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 TRMT10CQ7L0Y3 403 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 TRIM45Q9H8W5 580 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 ACTR5Q9H9F9 607 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 POLR3EQ9NVU0 708 aa13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 NXF1Q9UBU9 619 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 PAPOLAP51003 745 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 C6orf118Q5T5N4 469 aa13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 SLFN12LQ6IEE8 588 aa13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 PPP4R3CPQ6ZMV5 832 aa13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 CRLF3Q8IUI8 442 aa13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 SPICE1Q8N0Z3 855 aa13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 THEM5Q8N1Q8 247 aa13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 ABCA5Q8WWZ7 1642 aa13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 ENC1O14682 589 aa13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 LMNAP02545 664 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 MAML1Q92585 1016 aa13.77□□□□□ -0.21
CCDC88C-204ENST00000389857 CTNND1O60716 968 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 FBXW4P57775 412 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 DR1Q01658 176 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 ADCY2Q08462 1091 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 ELMOD1Q8N336 334 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 ANKRD13CQ8N6S4 541 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 SPATS2LQ9NUQ6 558 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 TJP3O95049 919 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 BMP3P12645 472 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 TBCCQ15814 346 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 RNF219Q5W0B1 726 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 RNF207Q6ZRF8 634 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 FBXO18Q8NFZ0 1043 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 PYROXD1Q8WU10 500 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 KLHL29Q96CT2 875 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 SUN2Q9UH99 717 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 CLIC2O15247 247 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 RPSAP08865 295 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 SRGAP2CP0DJJ0 459 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 VPS39Q96JC1 886 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 NHEJ1Q9H9Q4 299 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 ZMYND12Q9H0C1 365 aa13.76□□□□□ -0.21
CCDC88C-204ENST00000389857 TBK1Q9UHD2 729 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms