RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 FAM133BQ5BKY9 247 aaKnown RBP16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 CWF19L1Q69YN2 538 aaKnown RBP16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 POTEAQ6S8J7 498 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 DDX42Q86XP3 938 aaKnown RBP eCLIP16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 USP38Q8NB14 1042 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 PSMD1Q99460 953 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 NEUROG2Q9H2A3 272 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 TCRBV5S4A2TA0A5A2 114 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 NKRFO15226 690 aaKnown RBP eCLIP16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 PALMO75781 387 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 NEFHP12036 1026 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 SLC1A4P43007 532 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 CCDC152Q4G0S7 254 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 TRPM8Q7Z2W7 1104 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 MFN1Q8IWA4 741 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 SPICE1Q8N0Z3 855 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 NUP133Q8WUM0 1156 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 TLCD1Q96CP7 247 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 DHTKD1Q96HY7 919 aaPredicted RBP16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 STRBPQ96SI9 672 aaKnown RBP16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 CNNM2Q9H8M5 875 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 NHSQ6T4R5 1651 aa16.05■□□□□ 0.16
VPS9D1-201ENST00000389386 LUC7L3O95232 432 aaKnown RBP16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 FTCDO95954 541 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 ATP4AP20648 1035 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 GYG1P46976 350 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 PAPOLAP51003 745 aaKnown RBP16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 ALDH5A1P51649 535 aaPredicted RBP16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 CCNG1P51959 295 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 GFPT1Q06210 699 aaPredicted RBP16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 MTMR3Q13615 1198 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 UBE3CQ15386 1083 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 UBLCP1Q8WVY7 318 aaPredicted RBP16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 NUCKS1Q9H1E3 243 aaKnown RBP16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 ABCF2Q9UG63 623 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 SIK3Q9Y2K2 1263 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 MYH7BA7E2Y1 1941 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 SMIM22K7EJ46 135 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 CAND2O75155 1236 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 PRDM1O75626 825 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 RHOBTB3O94955 611 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 UQCRFS1P1P0C7P4 283 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 FERP16591 822 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 FLT3P36888 993 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 STAT6P42226 847 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 RRP12Q5JTH9 1297 aaKnown RBP16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 AKNAD1Q5T1N1 836 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 MEI1Q5TIA1 1274 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 ERICH1Q86X53 443 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 GPIHBP1Q8IV16 184 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 ZNF654Q8IZM8 581 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 DRAXINQ8NBI3 349 aaPredicted RBP16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 KRT23Q9C075 422 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 LRRC4CQ9HCJ2 640 aa16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 EPB41L4AQ9HCS5 686 aaPredicted RBP16.04■□□□□ 0.16
VPS9D1-201ENST00000389386 RCAN1P53805 252 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 TBC1D25Q3MII6 688 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 KRT71Q3SY84 523 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 ANKRD20A2Q5SQ80 823 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 ANKRD20A1Q5TYW2 823 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 ANKRD20A3Q5VUR7 823 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 ANKRD40Q6AI12 368 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 FAM114A1Q8IWE2 563 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 PRCCQ92733 491 aaPredicted RBP16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 FAM167BQ9BTA0 163 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 PAPOLBQ9NRJ5 636 aaKnown RBP16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 NCALDP61601 193 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 NPY5RQ15761 445 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 TMC4Q7Z404 712 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 P2RX5Q93086 422 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 FAM207AQ9NSI2 230 aaPredicted RBP16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 MYH6P13533 1939 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 hCG_1642624A0A1W2PR95 340 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 LRRC53A6NM62 1247 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 STXBP3O00186 592 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 SART1O43290 800 aaKnown RBP16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 CCNE1P24864 410 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 SF3A3Q12874 501 aaKnown RBP eCLIP16.03■□□□□ 0.168e-7■■■■□ 19.7
VPS9D1-201ENST00000389386 IFI16Q16666 785 aaKnown RBP16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 NAALADL2Q58DX5 795 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 MFSD6Q6ZSS7 791 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 RRAGAQ7L523 313 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 SLC51AQ86UW1 340 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 IFNL3Q8IZI9 196 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 TMTC2Q8N394 836 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 LCORLQ8N3X6 602 aa16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 ZNF513Q8N8E2 541 aaPredicted RBP16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 MOV10L1Q9BXT6 1211 aaKnown RBP16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 RTCBQ9Y3I0 505 aaKnown RBP16.03■□□□□ 0.16
VPS9D1-201ENST00000389386 COL5A3P25940 1745 aaPredicted RBP16.02■□□□□ 0.16
VPS9D1-201ENST00000389386 RARAP10276 462 aa16.02■□□□□ 0.16
VPS9D1-201ENST00000389386 CTCFP49711 727 aaPredicted RBP16.02■□□□□ 0.16
VPS9D1-201ENST00000389386 ROR2Q01974 943 aaKnown RBP16.02■□□□□ 0.16
VPS9D1-201ENST00000389386 EHHADHQ08426 723 aa16.02■□□□□ 0.16
VPS9D1-201ENST00000389386 MAP3K12Q12852 859 aa16.02■□□□□ 0.16
VPS9D1-201ENST00000389386 PARP10Q53GL7 1025 aa16.02■□□□□ 0.16
VPS9D1-201ENST00000389386 CACNA2D4Q7Z3S7 1137 aa16.02■□□□□ 0.16
VPS9D1-201ENST00000389386 LRRC34Q8IZ02 419 aa16.02■□□□□ 0.16
VPS9D1-201ENST00000389386 ARHGEF1Q92888 912 aaKnown RBP16.02■□□□□ 0.16
VPS9D1-201ENST00000389386 OSBPL1AQ9BXW6 950 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms