RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 SEMA3FQ13275 785 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 GUF1Q8N442 669 aaKnown RBP17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 RAD54LQ92698 747 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 CAPS2Q9BXY5 557 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 PACSIN1Q9BY11 444 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 NFU1Q9UMS0 254 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 SAMM50Q9Y512 469 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 SBF2Q86WG5 1849 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 NAV1Q8NEY1 1877 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 KLRG2A4D1S0 409 aaPredicted RBP17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 C21orf2O43822 256 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 NOL4O94818 638 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 ATP1A2P50993 1020 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 CCDC84Q86UT8 332 aaPredicted RBP17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 PLCD3Q8N3E9 789 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 BCAS4Q8TDM0 211 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 IFT81Q8WYA0 676 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 CUL5Q93034 780 aa17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 DDX60LQ5H9U9 1706 aaKnown RBP17.92■□□□□ 0.46
NKX3-1-201ENST00000380871 NPHP3-ACAD11A0A0J9YXS1 232 aa17.91■□□□□ 0.46
NKX3-1-201ENST00000380871 PALMO75781 387 aa17.91■□□□□ 0.46
NKX3-1-201ENST00000380871 MRPL12P52815 198 aaKnown RBP17.91■□□□□ 0.46
NKX3-1-201ENST00000380871 POLR2FP61218 127 aaKnown RBP17.91■□□□□ 0.46
NKX3-1-201ENST00000380871 ZIM3Q96PE6 472 aa17.91■□□□□ 0.46
NKX3-1-201ENST00000380871 GUCY2FP51841 1108 aa17.91■□□□□ 0.46
NKX3-1-201ENST00000380871 ICA1Q05084 483 aa17.91■□□□□ 0.46
NKX3-1-201ENST00000380871 PDCLQ13371 301 aa17.91■□□□□ 0.46
NKX3-1-201ENST00000380871 COBLL1Q53SF7 1204 aa17.91■□□□□ 0.46
NKX3-1-201ENST00000380871 SH3GL2Q99962 352 aa17.91■□□□□ 0.46
NKX3-1-201ENST00000380871 GOLPH3Q9H4A6 298 aa17.91■□□□□ 0.46
NKX3-1-201ENST00000380871 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.91■□□□□ 0.46
NKX3-1-201ENST00000380871 TRAF5O00463 557 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 RAD17O75943 681 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 PRLRP16471 622 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 EPHB4P54760 987 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 TTC31Q49AM3 519 aaPredicted RBP17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 NOX5Q96PH1 765 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 LSM14BQ9BX40 385 aaKnown RBP17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 FAM198AQ9UFP1 575 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 ZBTB5O15062 677 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 KLRC1P26715 233 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 HOXA13P31271 388 aaPredicted RBP17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 PPP1R2P41236 205 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 PAFAH1B1P43034 410 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 GUCY2DQ02846 1103 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 SH3BP5LQ7L8J4 393 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 PDGFDQ9GZP0 370 aaPredicted RBP17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 SWAP70Q9UH65 585 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 PCDHA12Q9UN75 941 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 ZNF831Q5JPB2 1677 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 PVALEFA0A1B0GWK0 134 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 E9PMD0 336 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 GH2P01242 217 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 COASYQ13057 564 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 PPFIA1Q13136 1202 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 CCDC40Q4G0X9 1142 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 FAM83BQ5T0W9 1011 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 PROCA1Q8NCQ7 364 aaPredicted RBP17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 EPB41L5Q9HCM4 733 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 STK17AQ9UEE5 414 aa17.9■□□□□ 0.46
NKX3-1-201ENST00000380871 MEIS1O00470 390 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 PPIP5K2O43314 1243 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 LIG3P49916 1009 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 FXR2P51116 673 aaKnown RBP eCLIP17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 LRRC63Q05C16 580 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 CDC37Q16543 378 aaPredicted RBP17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 PODNQ7Z5L7 613 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 PRMT6Q96LA8 375 aaPredicted RBP17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 PJA2O43164 708 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 HEXIM1O94992 359 aaKnown RBP17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 KRT18P05783 430 aaKnown RBP17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 ITIH3Q06033 890 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 EHHADHQ08426 723 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 HHIPL2Q6UWX4 724 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 AEBP2Q6ZN18 517 aaPredicted RBP17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 TBC1D5Q92609 795 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 CCDC43Q96MW1 224 aaKnown RBP17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 KIAA1024Q9UPX6 916 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 LY75O60449 1722 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 EIF3HO15372 352 aaKnown RBP eCLIP17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 JAG1P78504 1218 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 PRR16Q569H4 304 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 AKT1S1Q96B36 256 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 DNAJC19Q96DA6 116 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 RUFY1Q96T51 708 aa17.89■□□□□ 0.45
NKX3-1-201ENST00000380871 A0A087X0T9 212 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 F5H6K3 240 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 FAM228BP0C875 321 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 UBXN2AP68543 259 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 KLRC3Q07444 240 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 MYOCDQ8IZQ8 938 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 FAM133AQ8N9E0 248 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 KRT12Q99456 494 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 RAB34Q9BZG1 259 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 RIC8AQ9NPQ8 531 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 PI4KBQ9UBF8 816 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 ZBTB12Q9Y330 459 aaPredicted RBP17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 COL4A3BPQ9Y5P4 624 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 IGKV6D-41A0A0C4DH26 115 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms