RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TUBB2AQ13885 445 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 DPY19L2P1Q6NXN4 242 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 PDXDC1Q6P996 788 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 MOXD1Q6UVY6 613 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 TRIM59Q8IWR1 403 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 REEP2Q9BRK0 252 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 WDR18Q9BV38 432 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 TUBB2BQ9BVA1 445 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 LRRC27Q9C0I9 530 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 NLRC4Q9NPP4 1024 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 RGL1Q9NZL6 768 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 ZBTB12Q9Y330 459 aaPredicted RBP14.81□□□□□ -0.04
CCDC3-202ENST00000378839 CNTNAP1P78357 1384 aa14.81□□□□□ -0.04
CCDC3-202ENST00000378839 ZC3H3Q8IXZ2 948 aaKnown RBP14.8□□□□□ -0.04
CCDC3-202ENST00000378839 RNF216Q9NWF9 866 aaPredicted RBP14.8□□□□□ -0.04
CCDC3-202ENST00000378839 PPIP5K2O43314 1243 aa14.8□□□□□ -0.04
CCDC3-202ENST00000378839 MYBP10242 640 aa14.8□□□□□ -0.04
CCDC3-202ENST00000378839 KCNA1Q09470 495 aa14.8□□□□□ -0.04
CCDC3-202ENST00000378839 FOXR2Q6PJQ5 311 aa14.8□□□□□ -0.04
CCDC3-202ENST00000378839 SLFN12Q8IYM2 578 aa14.8□□□□□ -0.04
CCDC3-202ENST00000378839 RUSC1Q9BVN2 902 aa14.8□□□□□ -0.04
CCDC3-202ENST00000378839 ZHX3Q9H4I2 956 aa14.8□□□□□ -0.04
CCDC3-202ENST00000378839 SAR1BQ9Y6B6 198 aa14.8□□□□□ -0.04
CCDC3-202ENST00000378839 POLR3GO15318 223 aaPredicted RBP14.79□□□□□ -0.04
CCDC3-202ENST00000378839 KRT86O43790 486 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 MOCS3O95396 460 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 BRD3Q15059 726 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 ANKRD13CQ8N6S4 541 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 TSG101Q99816 390 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 GLIS2Q9BZE0 524 aaPredicted RBP14.79□□□□□ -0.04
CCDC3-202ENST00000378839 TANGO6Q9C0B7 1094 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 GLT8D2Q9H1C3 349 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 SCAF8Q9UPN6 1271 aaKnown RBP14.79□□□□□ -0.04
CCDC3-202ENST00000378839 SPDYE2BA6NHP3 402 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 RAD17O75943 681 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 SPDYE6P0CI01 402 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 RPA1P27694 616 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 CIITAP33076 1130 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 UBXN2AP68543 259 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 FAM83BQ5T0W9 1011 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 CCDC84Q86UT8 332 aaPredicted RBP14.79□□□□□ -0.04
CCDC3-202ENST00000378839 SFR1Q86XK3 245 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 CCDC65Q8IXS2 484 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 SYT2Q8N9I0 419 aaPredicted RBP14.79□□□□□ -0.04
CCDC3-202ENST00000378839 HNRNPLLQ8WVV9 542 aaKnown RBP14.79□□□□□ -0.04
CCDC3-202ENST00000378839 NAP1L4Q99733 375 aaKnown RBP14.79□□□□□ -0.04
CCDC3-202ENST00000378839 SH2D4AQ9H788 454 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.79□□□□□ -0.04
CCDC3-202ENST00000378839 ATP8B1O43520 1251 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 KIF20AO95235 890 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 GYS2P54840 703 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 EPM2AIP1Q7L775 607 aaPredicted RBP14.79□□□□□ -0.04
CCDC3-202ENST00000378839 CNKSR1Q969H4 720 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 IFIH1Q9BYX4 1025 aaKnown RBP14.79□□□□□ -0.04
CCDC3-202ENST00000378839 L1RE1Q9UN81 338 aa14.79□□□□□ -0.04
CCDC3-202ENST00000378839 SPDYE3A6NKU9 549 aa14.78□□□□□ -0.04
CCDC3-202ENST00000378839 MARSP56192 900 aaKnown RBP14.78□□□□□ -0.04
CCDC3-202ENST00000378839 SMC1AQ14683 1233 aaKnown RBP14.78□□□□□ -0.04
CCDC3-202ENST00000378839 EZH2Q15910 746 aaKnown RBP14.78□□□□□ -0.04
CCDC3-202ENST00000378839 CCDC40Q4G0X9 1142 aa14.78□□□□□ -0.04
CCDC3-202ENST00000378839 CC2D2BQ6DHV5 1058 aa14.78□□□□□ -0.04
CCDC3-202ENST00000378839 COG1Q8WTW3 980 aa14.78□□□□□ -0.04
CCDC3-202ENST00000378839 GMLQ99445 158 aa14.78□□□□□ -0.04
CCDC3-202ENST00000378839 FGFR1OPO95684 399 aaKnown RBP14.78□□□□□ -0.04
CCDC3-202ENST00000378839 OAS2P29728 719 aaKnown RBP14.78□□□□□ -0.04
CCDC3-202ENST00000378839 LSM14BQ9BX40 385 aaKnown RBP14.78□□□□□ -0.04
CCDC3-202ENST00000378839 BMP2KQ9NSY1 1161 aaPredicted RBP14.78□□□□□ -0.04
CCDC3-202ENST00000378839 SMARCAL1Q9NZC9 954 aa14.78□□□□□ -0.04
CCDC3-202ENST00000378839 WRAP73Q9P2S5 460 aaPredicted RBP14.78□□□□□ -0.04
CCDC3-202ENST00000378839 SFI1A8K8P3 1242 aa14.77□□□□□ -0.04
CCDC3-202ENST00000378839 PRPF6O94906 941 aaKnown RBP14.77□□□□□ -0.04
CCDC3-202ENST00000378839 ACTN1P12814 892 aa14.77□□□□□ -0.04
CCDC3-202ENST00000378839 ADAM9Q13443 819 aa14.77□□□□□ -0.04
CCDC3-202ENST00000378839 CCDC174Q6PII3 467 aa14.77□□□□□ -0.04
CCDC3-202ENST00000378839 SECISBP2LQ93073 1101 aaKnown RBP14.77□□□□□ -0.04
CCDC3-202ENST00000378839 DRC1Q96MC2 740 aa14.77□□□□□ -0.04
CCDC3-202ENST00000378839 CEP63Q96MT8 703 aa14.77□□□□□ -0.04
CCDC3-202ENST00000378839 HINFPQ9BQA5 517 aa14.77□□□□□ -0.04
CCDC3-202ENST00000378839 EIF2AK1Q9BQI3 630 aaKnown RBP14.77□□□□□ -0.04
CCDC3-202ENST00000378839 BHMT2Q9H2M3 363 aa14.77□□□□□ -0.04
CCDC3-202ENST00000378839 ZNF70Q9UC06 446 aaPredicted RBP14.77□□□□□ -0.04
CCDC3-202ENST00000378839 TBX3O15119 743 aa14.77□□□□□ -0.05
CCDC3-202ENST00000378839 N4BP1O75113 896 aaKnown RBP14.77□□□□□ -0.05
CCDC3-202ENST00000378839 ZMYND10O75800 440 aa14.77□□□□□ -0.05
CCDC3-202ENST00000378839 POLR2FP61218 127 aaKnown RBP14.77□□□□□ -0.05
CCDC3-202ENST00000378839 KIF5AQ12840 1032 aa14.77□□□□□ -0.05
CCDC3-202ENST00000378839 CTTNQ14247 550 aaKnown RBP14.77□□□□□ -0.05
CCDC3-202ENST00000378839 ZYXQ15942 572 aaKnown RBP14.77□□□□□ -0.05
CCDC3-202ENST00000378839 MIGA2Q7L4E1 593 aa14.77□□□□□ -0.05
CCDC3-202ENST00000378839 CCDC125Q86Z20 511 aa14.77□□□□□ -0.05
CCDC3-202ENST00000378839 NEK11Q8NG66 645 aa14.77□□□□□ -0.05
CCDC3-202ENST00000378839 PIGOQ8TEQ8 1089 aa14.77□□□□□ -0.05
CCDC3-202ENST00000378839 EHD2Q9NZN4 543 aa14.77□□□□□ -0.05
CCDC3-202ENST00000378839 PITPNM2Q9BZ72 1349 aa14.77□□□□□ -0.05
CCDC3-202ENST00000378839 PIK3CDO00329 1044 aa14.77□□□□□ -0.05
CCDC3-202ENST00000378839 NCK2O43639 380 aa14.77□□□□□ -0.05
CCDC3-202ENST00000378839 CYP3A4P08684 503 aa14.77□□□□□ -0.05
CCDC3-202ENST00000378839 SLC15A2Q16348 729 aa14.77□□□□□ -0.05
CCDC3-202ENST00000378839 CREG2Q8IUH2 290 aa14.77□□□□□ -0.05
CCDC3-202ENST00000378839 TMEM39BQ9GZU3 492 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms