RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 PDZK1P1A8MUH7 402 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 H7C1D1 291 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 VHLP40337 213 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 CSTF3Q12996 717 aaKnown RBP9.37□□□□□ -0.91
LIG3-202ENST00000378526 BBS9Q3SYG4 887 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 C11orf88Q6PI97 169 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 DHX32Q7L7V1 743 aaKnown RBP9.37□□□□□ -0.91
LIG3-202ENST00000378526 NLRP14Q86W24 1093 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 BTBD6Q96KE9 485 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 FHDC1Q9C0D6 1143 aaPredicted RBP9.37□□□□□ -0.91
LIG3-202ENST00000378526 BSDC1Q9NW68 430 aaPredicted RBP9.37□□□□□ -0.91
LIG3-202ENST00000378526 LSM1O15116 133 aaKnown RBP9.37□□□□□ -0.91
LIG3-202ENST00000378526 KRT37O76014 449 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 MSL3P1P0C860 447 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 CA4P22748 312 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 UBE3AQ05086 875 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 TRIM25Q14258 630 aaKnown RBP9.37□□□□□ -0.91
LIG3-202ENST00000378526 KBTBD12Q3ZCT8 623 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 FBXO38Q6PIJ6 1188 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.37□□□□□ -0.91
LIG3-202ENST00000378526 PGBD1Q96JS3 809 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 IL17RAQ96F46 866 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 SPRTNQ9H040 489 aaPredicted RBP9.37□□□□□ -0.91
LIG3-202ENST00000378526 ADA2Q9NZK5 511 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 DNAJC12Q9UKB3 198 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 PTPDC1A2A3K4 754 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 C8orf34Q49A92 452 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 Q4G0T1 1027 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 AASDHQ4L235 1098 aaPredicted RBP9.37□□□□□ -0.91
LIG3-202ENST00000378526 MNTQ99583 582 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 NOVA2Q9UNW9 492 aaKnown RBP9.37□□□□□ -0.91
LIG3-202ENST00000378526 PTPN22Q9Y2R2 807 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 UQCRFS1P1P0C7P4 283 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 FAM200BP0CF97 657 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 HMOX2P30519 316 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 PPP4R3CPQ6ZMV5 832 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 ABHD8Q96I13 439 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 PSD3Q9NYI0 1048 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 A0A1W2PRG6 482 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 CCDC162PA2VCL2 907 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 TSC22D2O75157 780 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 TRIM67Q6ZTA4 783 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 ZNF710Q8N1W2 664 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 MSL3Q8N5Y2 521 aaKnown RBP9.37□□□□□ -0.91
LIG3-202ENST00000378526 SSH1Q8WYL5 1049 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 ZNF556Q9HAH1 456 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 KIAA1468Q9P260 1216 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 PLS3P13797 630 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 EXOC8Q8IYI6 725 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 HIPK4Q8NE63 616 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 DEPDC1BQ8WUY9 529 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 EME1Q96AY2 570 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 OLA1Q9NTK5 396 aaKnown RBP9.36□□□□□ -0.91
LIG3-202ENST00000378526 STX8Q9UNK0 236 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 PCDHGA3Q9Y5H0 932 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 DAPK1P53355 1430 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 HSPA4LO95757 839 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 RSRC2Q7L4I2 434 aaKnown RBP9.36□□□□□ -0.91
LIG3-202ENST00000378526 DZIP3Q86Y13 1208 aaKnown RBP9.36□□□□□ -0.91
LIG3-202ENST00000378526 DCAF8L1A6NGE4 600 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 PPARGP37231 505 aaPredicted RBP9.36□□□□□ -0.91
LIG3-202ENST00000378526 NLRP6P59044 892 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 ATP8B2P98198 1209 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 FAPQ12884 760 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 WLSQ5T9L3 541 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 SDE2Q6IQ49 451 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 TDRD7Q8NHU6 1098 aaKnown RBP9.36□□□□□ -0.91
LIG3-202ENST00000378526 SPINK5Q9NQ38 1064 aaPredicted RBP9.36□□□□□ -0.91
LIG3-202ENST00000378526 FOXP2O15409 715 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 PGM1P36871 562 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 AKR1D1P51857 326 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 TMPRSS15P98073 1019 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 PPP2R5BQ15173 497 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 RCN1Q15293 331 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 AFAP1Q8N556 730 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 DCLK2Q8N568 766 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 GGNBP2Q9H3C7 697 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 KDM3AQ9Y4C1 1321 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 CCDC157Q569K6 752 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 ZFRQ96KR1 1074 aaKnown RBP9.36□□□□□ -0.91
LIG3-202ENST00000378526 TGS1Q96RS0 853 aaKnown RBP9.36□□□□□ -0.91
LIG3-202ENST00000378526 ZNF692Q9BU19 519 aaPredicted RBP9.36□□□□□ -0.91
LIG3-202ENST00000378526 DDHD2O94830 711 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 KLHL18O94889 574 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 TNNI2P48788 182 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 C16orf72Q14CZ0 275 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 TAF1BQ53T94 588 aaPredicted RBP9.36□□□□□ -0.91
LIG3-202ENST00000378526 ARHGAP17Q68EM7 881 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 PROCA1Q8NCQ7 364 aaPredicted RBP9.36□□□□□ -0.91
LIG3-202ENST00000378526 KDM4CQ9H3R0 1056 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 CCDC188H7C350 402 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 SAT1P21673 171 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 C16orf89Q6UX73 402 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 TAF8Q7Z7C8 310 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 CCDC36Q8IYA8 594 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 HPS1Q92902 700 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 RFT1Q96AA3 541 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 DHX36Q9H2U1 1008 aaKnown RBP9.36□□□□□ -0.91
LIG3-202ENST00000378526 SENP1Q9P0U3 644 aa9.36□□□□□ -0.91
LIG3-202ENST00000378526 SGO2Q562F6 1265 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms