RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 TRIM43Q96BQ3 446 aaPredicted RBP13.97□□□□□ -0.17
VRK3-202ENST00000377011 TIGD1Q96MW7 591 aa13.97□□□□□ -0.17
VRK3-202ENST00000377011 AIFM3Q96NN9 605 aa13.97□□□□□ -0.17
VRK3-202ENST00000377011 IWS1Q96ST2 819 aa13.97□□□□□ -0.17
VRK3-202ENST00000377011 IMPACTQ9P2X3 320 aa13.97□□□□□ -0.17
VRK3-202ENST00000377011 DDX41Q9UJV9 622 aaKnown RBP13.97□□□□□ -0.17
VRK3-202ENST00000377011 CDH23Q9H251 3354 aa13.96□□□□□ -0.17
VRK3-202ENST00000377011 LOC102724159A0A0B4J2E5 919 aa13.96□□□□□ -0.17
VRK3-202ENST00000377011 SMTNL1A8MU46 457 aa13.96□□□□□ -0.17
VRK3-202ENST00000377011 SPTLC2O15270 562 aa13.96□□□□□ -0.17
VRK3-202ENST00000377011 PQBP1O60828 265 aaKnown RBP13.96□□□□□ -0.17
VRK3-202ENST00000377011 ARHGAP1Q07960 439 aa13.96□□□□□ -0.17
VRK3-202ENST00000377011 PPP2R5BQ15173 497 aa13.96□□□□□ -0.17
VRK3-202ENST00000377011 PWP2Q15269 919 aaKnown RBP13.96□□□□□ -0.17
VRK3-202ENST00000377011 SF3A1Q15459 793 aaKnown RBP13.96□□□□□ -0.17
VRK3-202ENST00000377011 OR6J1Q8NGC5 347 aa13.96□□□□□ -0.17
VRK3-202ENST00000377011 PKNOX2Q96KN3 472 aa13.96□□□□□ -0.17
VRK3-202ENST00000377011 TSEN34Q9BSV6 310 aaKnown RBP13.96□□□□□ -0.17
VRK3-202ENST00000377011 FTOQ9C0B1 505 aaKnown RBP eCLIP13.96□□□□□ -0.17
VRK3-202ENST00000377011 PSTPIP2Q9H939 334 aa13.96□□□□□ -0.17
VRK3-202ENST00000377011 STARD7Q9NQZ5 370 aa13.96□□□□□ -0.17
VRK3-202ENST00000377011 PIK3CDO00329 1044 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 EIF3JO75822 258 aaKnown RBP13.95□□□□□ -0.18
VRK3-202ENST00000377011 CMA1P23946 247 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 MAGEA10P43363 369 aaPredicted RBP13.95□□□□□ -0.18
VRK3-202ENST00000377011 MDM2Q00987 491 aaPredicted RBP13.95□□□□□ -0.18
VRK3-202ENST00000377011 PFKFB3Q16875 520 aaPredicted RBP13.95□□□□□ -0.18
VRK3-202ENST00000377011 SCFD2Q8WU76 684 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 AFG1LQ8WV93 481 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 PDLIM7Q9NR12 457 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 KIAA1468Q9P260 1216 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 MOXD2PA6NHM9 499 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 CDK7P50613 346 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 RCAN1P53805 252 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 NAPAP54920 295 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 TPM4P67936 248 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 FAAP100Q0VG06 881 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 ZRSR1Q15695 479 aaKnown RBP13.95□□□□□ -0.18
VRK3-202ENST00000377011 LRRC8AQ8IWT6 810 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 CYP2W1Q8TAV3 490 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 CACTINQ8WUQ7 758 aaKnown RBP13.95□□□□□ -0.18
VRK3-202ENST00000377011 SDF4Q9BRK5 362 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 SLC26A6Q9BXS9 759 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 AP5M1Q9H0R1 490 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 STK36Q9NRP7 1315 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 GJB4Q9NTQ9 266 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 BARHL2Q9NY43 387 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 MAP3K20Q9NYL2 800 aaKnown RBP13.95□□□□□ -0.18
VRK3-202ENST00000377011 NR2E3Q9Y5X4 410 aa13.95□□□□□ -0.18
VRK3-202ENST00000377011 SCN10AQ9Y5Y9 1956 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 FAM237AA0A1B0GTK4 181 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 RIOK3O14730 519 aaKnown RBP13.94□□□□□ -0.18
VRK3-202ENST00000377011 EDIL3O43854 480 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 ATP9AO75110 1047 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 PPP6R2O75170 966 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 ITGB5P18084 799 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 UBA1P22314 1058 aaKnown RBP13.94□□□□□ -0.18
VRK3-202ENST00000377011 KCNJ6P48051 423 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 FOSBP53539 338 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 PURAQ00577 322 aaKnown RBP13.94□□□□□ -0.18
VRK3-202ENST00000377011 GUCY1B3Q02153 619 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 TTLL4Q14679 1199 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 ZNF710Q8N1W2 664 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 RASGRP4Q8TDF6 673 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 GDF15Q99988 308 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 MAF1Q9H063 256 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 PRDM5Q9NQX1 630 aaPredicted RBP13.94□□□□□ -0.18
VRK3-202ENST00000377011 RNF216Q9NWF9 866 aaPredicted RBP13.94□□□□□ -0.18
VRK3-202ENST00000377011 VPS54Q9P1Q0 977 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 PCDHA6Q9UN73 950 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 Q9Y3F1 56 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 PCDHA8Q9Y5H6 950 aa13.94□□□□□ -0.18
VRK3-202ENST00000377011 SMCO2A6NFE2 343 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 A6NJR5 290 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 KIF2AO00139 706 aaPredicted RBP13.93□□□□□ -0.18
VRK3-202ENST00000377011 PRPF3O43395 683 aaKnown RBP13.93□□□□□ -0.18
VRK3-202ENST00000377011 MYL3P08590 195 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 SCG2P13521 617 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 IFNAR1P17181 557 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 CLK2P49760 499 aaKnown RBP13.93□□□□□ -0.18
VRK3-202ENST00000377011 SLC39A14Q15043 492 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 HSDL1Q3SXM5 330 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 C1orf53Q5VUE5 145 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 ELOA2Q8IYF1 753 aaPredicted RBP13.93□□□□□ -0.18
VRK3-202ENST00000377011 PCSK9Q8NBP7 692 aaKnown RBP13.93□□□□□ -0.18
VRK3-202ENST00000377011 ANKRD7Q92527 254 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 KAT2BQ92831 832 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 VTI1AQ96AJ9 217 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 GLT1D1Q96MS3 346 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 UIMC1Q96RL1 719 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 SPC25Q9HBM1 224 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 UMODL1Q5DID0 1318 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 MMP3P08254 477 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 CCND2P30279 289 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 NDUFA8P51970 172 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 NLRP12P59046 1061 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 LRMPQ12912 555 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 AXDND1Q5T1B0 1012 aaPredicted RBP13.93□□□□□ -0.18
VRK3-202ENST00000377011 JAKMIP3Q5VZ66 844 aa13.93□□□□□ -0.18
VRK3-202ENST00000377011 FAM126BQ8IXS8 530 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms