RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 FSD1LQ9BXM9 530 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 SNX25Q9H3E2 840 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 SERPINB1P30740 379 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 RUNX1T1Q06455 604 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 TNFAIP1Q13829 316 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 EPM2AIP1Q7L775 607 aaPredicted RBP12.49□□□□□ -0.41
VPS13A-205ENST00000376636 PSTPIP2Q9H939 334 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 MRGBPQ9NV56 204 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 GOLGA8IPA6NC78 632 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 PFKFB1P16118 471 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 TCIRG1Q13488 830 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 CPXCR1Q8N123 301 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 CNOT6LQ96LI5 555 aaKnown RBP12.49□□□□□ -0.41
VPS13A-205ENST00000376636 TEKT3Q9BXF9 490 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 EML4Q9HC35 981 aaKnown RBP12.49□□□□□ -0.41
VPS13A-205ENST00000376636 IL10P22301 178 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 PTPROQ16827 1216 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 XKR9Q5GH70 373 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 HABP4Q5JVS0 413 aaKnown RBP12.49□□□□□ -0.41
VPS13A-205ENST00000376636 DNAJC24Q6P3W2 148 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 PPHLN1Q8NEY8 458 aaKnown RBP12.49□□□□□ -0.41
VPS13A-205ENST00000376636 MAGEB5Q9BZ81 275 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 GCNT4Q9P109 453 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 MROH5Q6ZUA9 1318 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 C16orf96A6NNT2 1141 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 KRT16P08779 473 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 YIPF3Q9GZM5 350 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 COPEO14579 308 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 EPHB1P54762 984 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 MAPRE2Q15555 327 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 C1orf228Q6PIY5 440 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 TTLL7Q6ZT98 887 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 TBC1D22AQ8WUA7 517 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 GCNAQ96QF7 691 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 ARAP1Q96P48 1450 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 UBXN8O00124 270 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 RIMBP2O15034 1052 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 NAA35Q5VZE5 725 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 ARMT1Q9H993 441 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 VPS54Q9P1Q0 977 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 PPARGC1AQ9UBK2 798 aaKnown RBP12.48□□□□□ -0.41
VPS13A-205ENST00000376636 GGA1Q9UJY5 639 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 PIK3R2O00459 728 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 ECM2O94769 699 aaPredicted RBP12.48□□□□□ -0.41
VPS13A-205ENST00000376636 ARIH2O95376 493 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 OR52Z1P0C646 297 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 HIBADHP31937 336 aaKnown RBP12.48□□□□□ -0.41
VPS13A-205ENST00000376636 HACD3Q9P035 362 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 PCDH11XQ9BZA7 1347 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 PCDH11YQ9BZA8 1340 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 ABCC12Q96J65 1359 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 LRRIQ4A6NIV6 560 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 CDR2LQ86X02 465 aaPredicted RBP12.48□□□□□ -0.41
VPS13A-205ENST00000376636 THAP11Q96EK4 314 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 CALN1Q9BXU9 219 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 IGF1RP08069 1367 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 ANXA13P27216 316 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 PSMC2P35998 433 aaKnown RBP12.48□□□□□ -0.41
VPS13A-205ENST00000376636 ADCY1Q08828 1119 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 TUBGCP2Q9BSJ2 902 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 UFL1O94874 794 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 C16orf72Q14CZ0 275 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 BTN2A2Q8WVV5 523 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 SPATA17Q96L03 361 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 TOP2BQ02880 1626 aa12.48□□□□□ -0.41
VPS13A-205ENST00000376636 MYO1DO94832 1006 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 GAP43P17677 238 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 KRT72Q14CN4 511 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 BLIDQ8IZY5 108 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 ACRBPQ8NEB7 543 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 TTC8Q8TAM2 541 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 ATG3Q9NT62 314 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 CCDC142Q17RM4 750 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 CNBD2Q96M20 576 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 SYCP2Q9BX26 1530 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 TBC1D4O60343 1298 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 PARP10Q53GL7 1025 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 NLRP9Q7RTR0 991 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 TLK2Q86UE8 772 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 TAB3Q8N5C8 712 aaPredicted RBP12.47□□□□□ -0.41
VPS13A-205ENST00000376636 TRAF3IP3Q9Y228 551 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 NSMFQ6X4W1 530 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 ASCC2Q9H1I8 757 aaPredicted RBP12.47□□□□□ -0.41
VPS13A-205ENST00000376636 AFPP02771 609 aaKnown RBP12.47□□□□□ -0.41
VPS13A-205ENST00000376636 TECP42680 631 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 FLCNQ8NFG4 579 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 AK8Q96MA6 479 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 ZBED1O96006 694 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 ADA2Q9NZK5 511 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 H0Y3Z8 333 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 ADCY3O60266 1144 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 TNNI3KQ59H18 835 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 KRT28Q7Z3Y7 464 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 HIPK4Q8NE63 616 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 FPGT-TNNI3KV9GXZ4 949 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 RASA4BC9J798 803 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 RASA4O43374 803 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 GPIHBP1Q8IV16 184 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 GID8Q9NWU2 228 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 MRPL11Q9Y3B7 192 aaKnown RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms