RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 FBXO38Q6PIJ6 1188 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 SH3RF1Q7Z6J0 888 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 ENOX1Q8TC92 643 aaKnown RBP15.96■□□□□ 0.15
HMGA1-203ENST00000374116 SOCS4Q8WXH5 440 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 SYMPKQ92797 1274 aaKnown RBP15.96■□□□□ 0.15
HMGA1-203ENST00000374116 DHX58Q96C10 678 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 EPSTI1Q96J88 318 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 FANCLQ9NW38 375 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 PFASO15067 1338 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 ADCY3O60266 1144 aa15.96■□□□□ 0.14
HMGA1-203ENST00000374116 SFPQP23246 707 aaKnown RBP eCLIP15.96■□□□□ 0.14
HMGA1-203ENST00000374116 HSD17B4P51659 736 aa15.96■□□□□ 0.14
HMGA1-203ENST00000374116 PRAMEF19Q5SWL8 479 aa15.96■□□□□ 0.14
HMGA1-203ENST00000374116 JAKMIP3Q5VZ66 844 aa15.96■□□□□ 0.14
HMGA1-203ENST00000374116 EEPD1Q7L9B9 569 aa15.96■□□□□ 0.14
HMGA1-203ENST00000374116 MCF2L2Q86YR7 1114 aa15.96■□□□□ 0.14
HMGA1-203ENST00000374116 ABRAQ8N0Z2 381 aa15.96■□□□□ 0.14
HMGA1-203ENST00000374116 FAM133AQ8N9E0 248 aa15.96■□□□□ 0.14
HMGA1-203ENST00000374116 MAML3Q96JK9 1138 aa15.96■□□□□ 0.14
HMGA1-203ENST00000374116 APBA2Q99767 749 aa15.96■□□□□ 0.14
HMGA1-203ENST00000374116 PNMA2Q9UL42 364 aa15.96■□□□□ 0.14
HMGA1-203ENST00000374116 ESYT2A0FGR8 921 aa15.95■□□□□ 0.14
HMGA1-203ENST00000374116 EIF2AK2P19525 551 aaKnown RBP15.95■□□□□ 0.14
HMGA1-203ENST00000374116 ERCC5P28715 1186 aaPredicted RBP15.95■□□□□ 0.14
HMGA1-203ENST00000374116 KCNJ6P48051 423 aa15.95■□□□□ 0.14
HMGA1-203ENST00000374116 ARHGEF6Q15052 776 aa15.95■□□□□ 0.14
HMGA1-203ENST00000374116 ARMCX5Q6P1M9 558 aa15.95■□□□□ 0.14
HMGA1-203ENST00000374116 GRAMD1CQ8IYS0 662 aa15.95■□□□□ 0.14
HMGA1-203ENST00000374116 CUL5Q93034 780 aa15.95■□□□□ 0.14
HMGA1-203ENST00000374116 PAGE5Q96GU1 130 aa15.95■□□□□ 0.14
HMGA1-203ENST00000374116 RIC8AQ9NPQ8 531 aa15.95■□□□□ 0.14
HMGA1-203ENST00000374116 ZNF215Q9UL58 517 aaPredicted RBP15.95■□□□□ 0.14
HMGA1-203ENST00000374116 VWA3AA6NCI4 1184 aa15.94■□□□□ 0.14
HMGA1-203ENST00000374116 GNRH1P01148 92 aa15.94■□□□□ 0.14
HMGA1-203ENST00000374116 TRAF1Q13077 416 aa15.94■□□□□ 0.14
HMGA1-203ENST00000374116 NAA30Q147X3 362 aaPredicted RBP15.94■□□□□ 0.14
HMGA1-203ENST00000374116 RMDN3Q96TC7 470 aa15.94■□□□□ 0.14
HMGA1-203ENST00000374116 YY1AP1Q9H869 796 aa15.94■□□□□ 0.14
HMGA1-203ENST00000374116 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.94■□□□□ 0.14
HMGA1-203ENST00000374116 FEZ2Q9UHY8 353 aaPredicted RBP15.94■□□□□ 0.14
HMGA1-203ENST00000374116 hCG_1984214I3L0E3 225 aa15.94■□□□□ 0.14
HMGA1-203ENST00000374116 SLU7O95391 586 aaKnown RBP15.94■□□□□ 0.14
HMGA1-203ENST00000374116 MCM7P33993 719 aa15.94■□□□□ 0.14
HMGA1-203ENST00000374116 ALDH5A1P51649 535 aaPredicted RBP15.94■□□□□ 0.14
HMGA1-203ENST00000374116 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.94■□□□□ 0.14
HMGA1-203ENST00000374116 VSTM4Q8IW00 320 aa15.94■□□□□ 0.14
HMGA1-203ENST00000374116 CCAR2Q8N163 923 aaKnown RBP15.94■□□□□ 0.14
HMGA1-203ENST00000374116 ZNF713Q8N859 430 aaPredicted RBP15.94■□□□□ 0.14
HMGA1-203ENST00000374116 IL31RAQ8NI17 732 aa15.94■□□□□ 0.14
HMGA1-203ENST00000374116 CCDC12Q8WUD4 166 aaPredicted RBP15.94■□□□□ 0.14
HMGA1-203ENST00000374116 GSDMAQ96QA5 445 aa15.94■□□□□ 0.14
HMGA1-203ENST00000374116 C6orf50Q9HD87 102 aa15.94■□□□□ 0.14
HMGA1-203ENST00000374116 ZNF236Q9UL36 1845 aa15.93■□□□□ 0.14
HMGA1-203ENST00000374116 HOXC6P09630 235 aa15.93■□□□□ 0.14
HMGA1-203ENST00000374116 GRK4P32298 578 aa15.93■□□□□ 0.14
HMGA1-203ENST00000374116 MRPL12P52815 198 aaKnown RBP15.93■□□□□ 0.14
HMGA1-203ENST00000374116 E2F4Q16254 413 aa15.93■□□□□ 0.14
HMGA1-203ENST00000374116 ARHGEF16Q5VV41 709 aa15.93■□□□□ 0.14
HMGA1-203ENST00000374116 PPP1R18Q6NYC8 613 aa15.93■□□□□ 0.14
HMGA1-203ENST00000374116 IQUBQ8NA54 791 aa15.93■□□□□ 0.14
HMGA1-203ENST00000374116 L2HGDHQ9H9P8 463 aa15.93■□□□□ 0.14
HMGA1-203ENST00000374116 NFE2L3Q9Y4A8 694 aa15.93■□□□□ 0.14
HMGA1-203ENST00000374116 CCDC194A0A1B0GVG4 234 aa15.92■□□□□ 0.14
HMGA1-203ENST00000374116 TUBB4AP04350 444 aa15.92■□□□□ 0.14
HMGA1-203ENST00000374116 MYCLP12524 364 aaPredicted RBP15.92■□□□□ 0.14
HMGA1-203ENST00000374116 ZNF18P17022 549 aa15.92■□□□□ 0.14
HMGA1-203ENST00000374116 LONP1P36776 959 aaKnown RBP15.92■□□□□ 0.14
HMGA1-203ENST00000374116 DPYDQ12882 1025 aa15.92■□□□□ 0.14
HMGA1-203ENST00000374116 PTPN14Q15678 1187 aa15.92■□□□□ 0.14
HMGA1-203ENST00000374116 MCOLN1Q9GZU1 580 aa15.92■□□□□ 0.14
HMGA1-203ENST00000374116 PXMP2Q9NR77 195 aa15.92■□□□□ 0.14
HMGA1-203ENST00000374116 PIK3CDO00329 1044 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 SNAI1O95863 264 aaPredicted RBP15.91■□□□□ 0.14
HMGA1-203ENST00000374116 XRCC5P13010 732 aaKnown RBP15.91■□□□□ 0.14
HMGA1-203ENST00000374116 GNA11P29992 359 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 AFMP43652 599 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 CLK2P49760 499 aaKnown RBP15.91■□□□□ 0.14
HMGA1-203ENST00000374116 IRF5Q13568 498 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 SLC9C1Q4G0N8 1177 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 ARMCX2Q7L311 632 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 REXO1Q8N1G1 1221 aaKnown RBP15.91■□□□□ 0.14
HMGA1-203ENST00000374116 TINF2Q9BSI4 451 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 ZNF446Q9NWS9 450 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 SLC5A4Q9NY91 659 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 SPDYE3A6NKU9 549 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 USP27XA6NNY8 438 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 GHRHRQ02643 423 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 CACNB2Q08289 660 aaPredicted RBP15.91■□□□□ 0.14
HMGA1-203ENST00000374116 PGM5Q15124 567 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 INF2Q27J81 1249 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 FBXO46Q6PJ61 603 aaPredicted RBP15.91■□□□□ 0.14
HMGA1-203ENST00000374116 KRT25Q7Z3Z0 450 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 FBXO16Q8IX29 292 aaPredicted RBP15.91■□□□□ 0.14
HMGA1-203ENST00000374116 UIMC1Q96RL1 719 aa15.91■□□□□ 0.14
HMGA1-203ENST00000374116 LAD1O00515 517 aa15.9■□□□□ 0.14
HMGA1-203ENST00000374116 ATP8B1O43520 1251 aa15.9■□□□□ 0.14
HMGA1-203ENST00000374116 INHAP05111 366 aa15.9■□□□□ 0.14
HMGA1-203ENST00000374116 TXLNAP40222 546 aa15.9■□□□□ 0.14
HMGA1-203ENST00000374116 HNRNPH2P55795 449 aaKnown RBP15.9■□□□□ 0.14
HMGA1-203ENST00000374116 MTFR1Q15390 333 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms