RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 MNS1Q8NEH6 495 aa9.66□□□□□ -0.86
SNRNP40-202ENST00000373720 UBXN4Q92575 508 aa9.66□□□□□ -0.86
SNRNP40-202ENST00000373720 CNOT6LQ96LI5 555 aaKnown RBP9.66□□□□□ -0.86
SNRNP40-202ENST00000373720 EIF3CQ99613 913 aaKnown RBP9.66□□□□□ -0.86
SNRNP40-202ENST00000373720 MKNK1Q9BUB5 465 aa9.66□□□□□ -0.86
SNRNP40-202ENST00000373720 VPS16Q9H269 839 aa9.66□□□□□ -0.86
SNRNP40-202ENST00000373720 NDST4Q9H3R1 872 aa9.66□□□□□ -0.86
SNRNP40-202ENST00000373720 TRMT1Q9NXH9 659 aaKnown RBP9.66□□□□□ -0.86
SNRNP40-202ENST00000373720 GDAQ9Y2T3 454 aa9.66□□□□□ -0.86
SNRNP40-202ENST00000373720 EPN1Q9Y6I3 576 aaPredicted RBP9.66□□□□□ -0.86
SNRNP40-202ENST00000373720 CNTNAP1P78357 1384 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 SCN9AQ15858 1988 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 ANO9A1A5B4 782 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 CTAGE9A4FU28 777 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 PP2D1A8MPX8 630 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 MEIS1O00470 390 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 EDIL3O43854 480 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 NDUFA10O95299 355 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 LYPLA2O95372 231 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 KRT18P05783 430 aaKnown RBP9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 RFX1P22670 979 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 PTGER2P43116 358 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 SLC12A3P55017 1021 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 ADKP55263 362 aaKnown RBP9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 GNG11P61952 73 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 MCM6Q14566 821 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 EPHA7Q15375 998 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 IQCEQ6IPM2 695 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 CREBRFQ8IUR6 639 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 C17orf53Q8N3J3 647 aaPredicted RBP9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 CCDC155Q8N6L0 562 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 GPR161Q8N6U8 529 aaKnown RBP9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 KIAA0895Q8NCT3 520 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 ZNF592Q92610 1267 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 RUBCNQ92622 972 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 STAMQ92783 540 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 SLC5A5Q92911 643 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 CDHR1Q96JP9 859 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 HSD17B14Q9BPX1 270 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 CPVLQ9H3G5 476 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 EMILIN3Q9NT22 766 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 PGAP2Q9UHJ9 254 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 TCEAL9Q9UHQ7 104 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 KIAA1024Q9UPX6 916 aa9.65□□□□□ -0.86
SNRNP40-202ENST00000373720 TCP10L2B9ZVM9 353 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 USP17L15C9J2P7 530 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 USP17L13C9JLJ4 530 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 USP17L11C9JVI0 530 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 USP17L18D6R9N7 530 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 USP17L22D6RA61 530 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 USP17L17D6RBQ6 530 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 USP17L19D6RCP7 530 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 USP17L20D6RJB6 530 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 WNT10BO00744 389 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 ATP2A1O14983 1001 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 ADAMTS3O15072 1205 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 ZBED4O75132 1171 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 TBCAO75347 108 aaKnown RBP9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 GFPT2O94808 682 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 GDF11O95390 407 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 LCA5LO95447 670 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 CCDC172P0C7W6 258 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 IDEP14735 1019 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 PRLRP16471 622 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 CYP11B2P19099 503 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 SFNP31947 248 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 CXCL9Q07325 125 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 USP17L24Q0WX57 530 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 COASYQ13057 564 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 SPA17Q15506 151 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 UBE2SQ16763 222 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 WHAMMP3Q1A5X7 153 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 ZCWPW2Q504Y3 356 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 PRR16Q569H4 304 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 HERC4Q5GLZ8 1057 aaPredicted RBP9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 USP17L6PQ6QN14 398 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 POTEAQ6S8J7 498 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 SYT10Q6XYQ8 523 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 OTOP1Q7RTM1 612 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 CATSPER3Q86XQ3 398 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 SMYD4Q8IYR2 804 aaPredicted RBP9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 RNF10Q8N5U6 811 aaKnown RBP9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 MSL3Q8N5Y2 521 aaKnown RBP9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 RBM46Q8TBY0 533 aaKnown RBP9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 LENG9Q96B70 501 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 ZFP91Q96JP5 570 aaPredicted RBP9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 C12orf42Q96LP6 360 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 CCDC42Q96M95 316 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 SLF1Q9BQI6 1058 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 ZNF341Q9BYN7 854 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 TTYH3Q9C0H2 523 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 SEMA6BQ9H3T3 888 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 C17orf75Q9HAS0 396 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 PLCB1Q9NQ66 1216 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 TAB2Q9NYJ8 693 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 RNF14Q9UBS8 474 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 RGS17Q9UGC6 210 aaPredicted RBP9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 TSKSQ9UJT2 592 aa9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 DBR1Q9UK59 544 aaKnown RBP9.64□□□□□ -0.87
SNRNP40-202ENST00000373720 LOXHD1Q8IVV2 1947 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms