RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 PPP4R2Q9NY27 417 aa24.81■■□□□ 1.56
CCDC28B-201ENST00000373602 CDH23Q9H251 3354 aa24.81■■□□□ 1.56
CCDC28B-201ENST00000373602 ESYT2A0FGR8 921 aa24.8■■□□□ 1.56
CCDC28B-201ENST00000373602 SREBF1P36956 1147 aa24.8■■□□□ 1.56
CCDC28B-201ENST00000373602 KCNJ6P48051 423 aa24.8■■□□□ 1.56
CCDC28B-201ENST00000373602 WDR5P61964 334 aaKnown RBP24.8■■□□□ 1.56
CCDC28B-201ENST00000373602 ADAM17P78536 824 aa24.8■■□□□ 1.56
CCDC28B-201ENST00000373602 PKN1Q16512 942 aa24.8■■□□□ 1.56
CCDC28B-201ENST00000373602 CEP55Q53EZ4 464 aa24.8■■□□□ 1.56
CCDC28B-201ENST00000373602 PPP2R2DQ66LE6 453 aa24.8■■□□□ 1.56
CCDC28B-201ENST00000373602 RUFY3Q7L099 469 aa24.8■■□□□ 1.56
CCDC28B-201ENST00000373602 ZSWIM6Q9HCJ5 1215 aa24.8■■□□□ 1.56
CCDC28B-201ENST00000373602 ABHD14A-ACY1A0A1B0GW23 586 aa24.79■■□□□ 1.56
CCDC28B-201ENST00000373602 RSPH10B2B2RC85 870 aa24.79■■□□□ 1.56
CCDC28B-201ENST00000373602 CAND2O75155 1236 aa24.79■■□□□ 1.56
CCDC28B-201ENST00000373602 RSPH10BP0C881 870 aa24.79■■□□□ 1.56
CCDC28B-201ENST00000373602 NTRK3Q16288 839 aa24.79■■□□□ 1.56
CCDC28B-201ENST00000373602 TCTN1Q2MV58 587 aa24.79■■□□□ 1.56
CCDC28B-201ENST00000373602 ERICH6BQ5W0A0 696 aa24.79■■□□□ 1.56
CCDC28B-201ENST00000373602 ZMYND12Q9H0C1 365 aa24.79■■□□□ 1.56
CCDC28B-201ENST00000373602 EMSYQ7Z589 1322 aa24.79■■□□□ 1.56
CCDC28B-201ENST00000373602 LGR5O75473 907 aa24.78■■□□□ 1.56
CCDC28B-201ENST00000373602 PDIA3P30101 505 aaKnown RBP24.78■■□□□ 1.56
CCDC28B-201ENST00000373602 CCDC12Q8WUD4 166 aaPredicted RBP24.78■■□□□ 1.56
CCDC28B-201ENST00000373602 LMBR1Q8WVP7 490 aa24.78■■□□□ 1.56
CCDC28B-201ENST00000373602 JPH1Q9HDC5 661 aaPredicted RBP24.78■■□□□ 1.56
CCDC28B-201ENST00000373602 ERAP1Q9NZ08 941 aa24.78■■□□□ 1.56
CCDC28B-201ENST00000373602 SLC9A2Q9UBY0 812 aa24.78■■□□□ 1.56
CCDC28B-201ENST00000373602 NFASCO94856 1347 aa24.78■■□□□ 1.56
CCDC28B-201ENST00000373602 NRCAMQ92823 1304 aa24.78■■□□□ 1.56
CCDC28B-201ENST00000373602 MYO9BQ13459 2157 aa24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 KIF28PB7ZC32 967 aa24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 MEIS1O00470 390 aa24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 EFCAB14O75071 495 aa24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 CA3P07451 260 aa24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 ARP10275 920 aa24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 ARHGAP4P98171 946 aa24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 TOB2Q14106 344 aaPredicted RBP24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 ADGRE1Q14246 886 aa24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 JAKMIP3Q5VZ66 844 aa24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 PHKBQ93100 1093 aa24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 RNF26Q9BY78 433 aaPredicted RBP24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 TM6SF1Q9BZW5 370 aa24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 SMARCAD1Q9H4L7 1026 aa24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 C6orf50Q9HD87 102 aa24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 CYP46A1Q9Y6A2 500 aa24.77■■□□□ 1.56
CCDC28B-201ENST00000373602 DLL1O00548 723 aa24.76■■□□□ 1.55
CCDC28B-201ENST00000373602 IFNAR1P17181 557 aa24.76■■□□□ 1.55
CCDC28B-201ENST00000373602 AKAP17AQ02040 695 aaKnown RBP24.76■■□□□ 1.55
CCDC28B-201ENST00000373602 IKBKEQ14164 716 aa24.76■■□□□ 1.55
CCDC28B-201ENST00000373602 NIPA1Q7RTP0 329 aa24.76■■□□□ 1.55
CCDC28B-201ENST00000373602 GLG1Q92896 1179 aa24.76■■□□□ 1.55
CCDC28B-201ENST00000373602 SDF4Q9BRK5 362 aa24.76■■□□□ 1.55
CCDC28B-201ENST00000373602 AGO4Q9HCK5 861 aaKnown RBP24.76■■□□□ 1.55
CCDC28B-201ENST00000373602 PTPRSQ13332 1948 aa24.75■■□□□ 1.55
CCDC28B-201ENST00000373602 ZNF76P36508 570 aa24.75■■□□□ 1.55
CCDC28B-201ENST00000373602 CCT2P78371 535 aaKnown RBP24.75■■□□□ 1.55
CCDC28B-201ENST00000373602 DEFB103AP81534 67 aa24.75■■□□□ 1.55
CCDC28B-201ENST00000373602 ITGB3BPQ13352 177 aaPredicted RBP24.75■■□□□ 1.55
CCDC28B-201ENST00000373602 MCTP2Q6DN12 878 aa24.75■■□□□ 1.55
CCDC28B-201ENST00000373602 CRYGNQ8WXF5 182 aa24.75■■□□□ 1.55
CCDC28B-201ENST00000373602 PCYT2Q99447 389 aa24.75■■□□□ 1.55
CCDC28B-201ENST00000373602 RBAK-RBAKDNI3L0D1 243 aa24.74■■□□□ 1.55
CCDC28B-201ENST00000373602 ADAMTS3O15072 1205 aa24.74■■□□□ 1.55
CCDC28B-201ENST00000373602 CYP3A4P08684 503 aa24.74■■□□□ 1.55
CCDC28B-201ENST00000373602 CTSHP09668 335 aa24.74■■□□□ 1.55
CCDC28B-201ENST00000373602 MARK3P27448 753 aa24.74■■□□□ 1.55
CCDC28B-201ENST00000373602 GNA11P29992 359 aa24.74■■□□□ 1.55
CCDC28B-201ENST00000373602 PPFIA1Q13136 1202 aa24.74■■□□□ 1.55
CCDC28B-201ENST00000373602 PLEKHG4Q58EX7 1191 aa24.74■■□□□ 1.55
CCDC28B-201ENST00000373602 USP38Q8NB14 1042 aa24.74■■□□□ 1.55
CCDC28B-201ENST00000373602 DBF4BQ8NFT6 615 aa24.74■■□□□ 1.55
CCDC28B-201ENST00000373602 SLC26A6Q9BXS9 759 aa24.74■■□□□ 1.55
CCDC28B-201ENST00000373602 NCOA5Q9HCD5 579 aaKnown RBP24.74■■□□□ 1.55
CCDC28B-201ENST00000373602 KAT6AQ92794 2004 aa24.73■■□□□ 1.55
CCDC28B-201ENST00000373602 FAM86B1E9PN63 330 aa24.73■■□□□ 1.55
CCDC28B-201ENST00000373602 TLL1O43897 1013 aa24.73■■□□□ 1.55
CCDC28B-201ENST00000373602 PPFIA3O75145 1194 aa24.73■■□□□ 1.55
CCDC28B-201ENST00000373602 FAM86B2P0C5J1 330 aa24.73■■□□□ 1.55
CCDC28B-201ENST00000373602 ACTR2P61160 394 aa24.73■■□□□ 1.55
CCDC28B-201ENST00000373602 TAP1Q03518 808 aa24.73■■□□□ 1.55
CCDC28B-201ENST00000373602 MKRN4PQ13434 485 aaPredicted RBP24.73■■□□□ 1.55
CCDC28B-201ENST00000373602 GRIK4Q16099 956 aa24.73■■□□□ 1.55
CCDC28B-201ENST00000373602 FAM26DQ5JW98 314 aa24.73■■□□□ 1.55
CCDC28B-201ENST00000373602 TAF2Q6P1X5 1199 aa24.73■■□□□ 1.55
CCDC28B-201ENST00000373602 TMCO2Q7Z6W1 182 aaPredicted RBP24.73■■□□□ 1.55
CCDC28B-201ENST00000373602 RPAINQ86UA6 219 aa24.73■■□□□ 1.55
CCDC28B-201ENST00000373602 REXO1Q8N1G1 1221 aaKnown RBP24.73■■□□□ 1.55
CCDC28B-201ENST00000373602 MBLAC1A4D2B0 266 aaPredicted RBP24.72■■□□□ 1.55
CCDC28B-201ENST00000373602 ARHGEF15O94989 841 aa24.72■■□□□ 1.55
CCDC28B-201ENST00000373602 IGFBP4P22692 258 aa24.72■■□□□ 1.55
CCDC28B-201ENST00000373602 PLA2G4DQ86XP0 818 aa24.72■■□□□ 1.55
CCDC28B-201ENST00000373602 ZNF274Q96GC6 653 aaPredicted RBP24.72■■□□□ 1.55
CCDC28B-201ENST00000373602 OSBPL7Q9BZF2 842 aa24.72■■□□□ 1.55
CCDC28B-201ENST00000373602 UPF3BQ9BZI7 483 aaKnown RBP24.72■■□□□ 1.55
CCDC28B-201ENST00000373602 AZI2Q9H6S1 392 aa24.72■■□□□ 1.55
CCDC28B-201ENST00000373602 IGLV3-22A0A075B6J6 115 aa24.71■■□□□ 1.55
CCDC28B-201ENST00000373602 ATG7O95352 703 aa24.71■■□□□ 1.55
CCDC28B-201ENST00000373602 GJB5O95377 273 aa24.71■■□□□ 1.55
CCDC28B-201ENST00000373602 MARCH8Q5T0T0 291 aa24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms