RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 KIAA0753Q2KHM9 967 aa17.09■□□□□ 0.33
SMPDL3A-201ENST00000368440 SEPT1Q8WYJ6 367 aa17.09■□□□□ 0.33
SMPDL3A-201ENST00000368440 TOX2Q96NM4 488 aa17.09■□□□□ 0.33
SMPDL3A-201ENST00000368440 PCYT2Q99447 389 aa17.09■□□□□ 0.33
SMPDL3A-201ENST00000368440 FOXD4L1Q9NU39 408 aa17.09■□□□□ 0.33
SMPDL3A-201ENST00000368440 MROH7Q68CQ1 1323 aa17.08■□□□□ 0.33
SMPDL3A-201ENST00000368440 TRIM43BA6NCK2 446 aa17.08■□□□□ 0.33
SMPDL3A-201ENST00000368440 DCDC2CA8MYV0 355 aa17.08■□□□□ 0.33
SMPDL3A-201ENST00000368440 CD4P01730 458 aa17.08■□□□□ 0.33
SMPDL3A-201ENST00000368440 CLTBP09497 229 aa17.08■□□□□ 0.33
SMPDL3A-201ENST00000368440 ETNPPLQ8TBG4 499 aa17.08■□□□□ 0.33
SMPDL3A-201ENST00000368440 SLC5A5Q92911 643 aa17.08■□□□□ 0.33
SMPDL3A-201ENST00000368440 TRIM43Q96BQ3 446 aaPredicted RBP17.08■□□□□ 0.33
SMPDL3A-201ENST00000368440 FOXP1Q9H334 677 aaPredicted RBP17.08■□□□□ 0.33
SMPDL3A-201ENST00000368440 TRMT13Q9NUP7 481 aaKnown RBP17.08■□□□□ 0.33
SMPDL3A-201ENST00000368440 KIF3AQ9Y496 699 aa17.08■□□□□ 0.33
SMPDL3A-201ENST00000368440 H3BRB1 525 aa17.07■□□□□ 0.32
SMPDL3A-201ENST00000368440 PPP4R3AQ6IN85 833 aa17.07■□□□□ 0.32
SMPDL3A-201ENST00000368440 NFRKBQ6P4R8 1299 aa17.07■□□□□ 0.32
SMPDL3A-201ENST00000368440 POTEDQ86YR6 584 aa17.07■□□□□ 0.32
SMPDL3A-201ENST00000368440 KATNAL1Q9BW62 490 aa17.07■□□□□ 0.32
SMPDL3A-201ENST00000368440 TUT1Q9H6E5 874 aaKnown RBP17.07■□□□□ 0.32
SMPDL3A-201ENST00000368440 TBC1D22BQ9NU19 505 aa17.07■□□□□ 0.32
SMPDL3A-201ENST00000368440 HDAC6Q9UBN7 1215 aa17.07■□□□□ 0.32
SMPDL3A-201ENST00000368440 ITGB8P26012 769 aa17.07■□□□□ 0.32
SMPDL3A-201ENST00000368440 HIC1Q14526 733 aa17.07■□□□□ 0.32
SMPDL3A-201ENST00000368440 TRIP12Q14669 1992 aaPredicted RBP17.07■□□□□ 0.32
SMPDL3A-201ENST00000368440 PSMD10O75832 226 aa17.06■□□□□ 0.32
SMPDL3A-201ENST00000368440 ATG7O95352 703 aa17.06■□□□□ 0.32
SMPDL3A-201ENST00000368440 GCFC2P16383 781 aaKnown RBP17.06■□□□□ 0.32
SMPDL3A-201ENST00000368440 LRCH2Q5VUJ6 765 aa17.06■□□□□ 0.32
SMPDL3A-201ENST00000368440 GDF6Q6KF10 455 aaPredicted RBP17.06■□□□□ 0.32
SMPDL3A-201ENST00000368440 ABHD15Q6UXT9 468 aa17.06■□□□□ 0.32
SMPDL3A-201ENST00000368440 NOSTRINQ8IVI9 506 aa17.06■□□□□ 0.32
SMPDL3A-201ENST00000368440 HSCBQ8IWL3 235 aa17.06■□□□□ 0.32
SMPDL3A-201ENST00000368440 KCNMB3Q9NPA1 279 aa17.06■□□□□ 0.32
SMPDL3A-201ENST00000368440 TMEM39AQ9NV64 488 aa17.06■□□□□ 0.32
SMPDL3A-201ENST00000368440 TBX21Q9UL17 535 aa17.06■□□□□ 0.32
SMPDL3A-201ENST00000368440 EMSYQ7Z589 1322 aa17.06■□□□□ 0.32
SMPDL3A-201ENST00000368440 TLR3O15455 904 aaKnown RBP17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 GAS7O60861 476 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 LGR5O75473 907 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 ATP2B1P20020 1258 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 U2AF2P26368 475 aaKnown RBP eCLIP17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 MARK3P27448 753 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 GNL2Q13823 731 aaKnown RBP17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 BECN1Q14457 450 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 PRPF38BQ5VTL8 546 aaKnown RBP17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 SESTD1Q86VW0 696 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 CTAGE1Q96RT6 745 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 SEZ6LQ9BYH1 1024 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 UNC45AQ9H3U1 944 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 RNPEPQ9H4A4 650 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 GTF2IRD1Q9UHL9 959 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 CHMP2AO43633 222 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 SUPT20HL2P0C7V6 817 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 ZNF200P98182 395 aaPredicted RBP17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 PTPN11Q06124 597 aaPredicted RBP17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 LARP1BQ659C4 914 aaKnown RBP17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 ZNF746Q6NUN9 644 aaPredicted RBP17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 CCDC60Q8IWA6 550 aaPredicted RBP17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 C7orf31Q8N865 590 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 HAS1Q92839 578 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 INTS4Q96HW7 963 aaKnown RBP17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 RIT2Q99578 217 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 NAP1L4Q99733 375 aaKnown RBP17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 TEKT3Q9BXF9 490 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 ZNF215Q9UL58 517 aaPredicted RBP17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 CEP290O15078 2479 aa17.05■□□□□ 0.32
SMPDL3A-201ENST00000368440 IGKV6D-21A0A0A0MT36 114 aa17.04■□□□□ 0.32
SMPDL3A-201ENST00000368440 H3BQV1 296 aa17.04■□□□□ 0.32
SMPDL3A-201ENST00000368440 KIAA0355O15063 1070 aa17.04■□□□□ 0.32
SMPDL3A-201ENST00000368440 SMIM10L2AP0DMW4 78 aa17.04■□□□□ 0.32
SMPDL3A-201ENST00000368440 SMIM10L2BP0DMW5 78 aa17.04■□□□□ 0.32
SMPDL3A-201ENST00000368440 CYP2C9P11712 490 aa17.04■□□□□ 0.32
SMPDL3A-201ENST00000368440 KRT76Q01546 638 aa17.04■□□□□ 0.32
SMPDL3A-201ENST00000368440 NBR1Q14596 966 aa17.04■□□□□ 0.32
SMPDL3A-201ENST00000368440 MCTP1Q6DN14 999 aa17.04■□□□□ 0.32
SMPDL3A-201ENST00000368440 GLG1Q92896 1179 aa17.04■□□□□ 0.32
SMPDL3A-201ENST00000368440 PRKAG2Q9UGJ0 569 aa17.04■□□□□ 0.32
SMPDL3A-201ENST00000368440 UMODL1Q5DID0 1318 aa17.04■□□□□ 0.32
SMPDL3A-201ENST00000368440 MAGEA10P43363 369 aaPredicted RBP17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 MDM2Q00987 491 aaPredicted RBP17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 B3GNT9Q6UX72 402 aa17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 PPP1R12CQ9BZL4 782 aa17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 SMARCAD1Q9H4L7 1026 aa17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 VAV3Q9UKW4 847 aa17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 MYH9P35579 1960 aaKnown RBP17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 TANC1Q9C0D5 1861 aa17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 MCM7P33993 719 aa17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 PTGISQ16647 500 aa17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 SMAP1Q8IYB5 467 aaPredicted RBP17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 SPRYD3Q8NCJ5 442 aa17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 BADQ92934 168 aa17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 TMEM60Q9H2L4 133 aa17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 AZI2Q9H6S1 392 aa17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 ERAP1Q9NZ08 941 aa17.03■□□□□ 0.32
SMPDL3A-201ENST00000368440 RBAK-RBAKDNI3L0D1 243 aa17.02■□□□□ 0.32
SMPDL3A-201ENST00000368440 BACH1O14867 736 aa17.02■□□□□ 0.32
SMPDL3A-201ENST00000368440 NEMFO60524 1076 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms