RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 MYL7Q01449 175 aa9.34□□□□□ -0.91
SYNE1-206ENST00000367253 TAF11Q15544 211 aa9.34□□□□□ -0.91
SYNE1-206ENST00000367253 BRINP3Q76B58 766 aa9.34□□□□□ -0.91
SYNE1-206ENST00000367253 GOLGA5Q8TBA6 731 aa9.34□□□□□ -0.91
SYNE1-206ENST00000367253 TRIM62Q9BVG3 475 aa9.34□□□□□ -0.91
SYNE1-206ENST00000367253 RPF1Q9H9Y2 349 aaKnown RBP9.34□□□□□ -0.91
SYNE1-206ENST00000367253 IGSF1Q8N6C5 1336 aa9.34□□□□□ -0.91
SYNE1-206ENST00000367253 MEI4A8MW99 385 aa9.34□□□□□ -0.92
SYNE1-206ENST00000367253 FOSL1P15407 271 aa9.34□□□□□ -0.92
SYNE1-206ENST00000367253 PHBP35232 272 aa9.34□□□□□ -0.92
SYNE1-206ENST00000367253 NPY2RP49146 381 aa9.34□□□□□ -0.92
SYNE1-206ENST00000367253 SLC12A2P55011 1212 aa9.34□□□□□ -0.92
SYNE1-206ENST00000367253 RAD51AP2Q09MP3 1159 aa9.34□□□□□ -0.92
SYNE1-206ENST00000367253 DRP2Q13474 957 aa9.34□□□□□ -0.92
SYNE1-206ENST00000367253 CYP4A22Q5TCH4 519 aa9.34□□□□□ -0.92
SYNE1-206ENST00000367253 B4GALNT2Q8NHY0 566 aa9.34□□□□□ -0.92
SYNE1-206ENST00000367253 TMEM39AQ9NV64 488 aa9.34□□□□□ -0.92
SYNE1-206ENST00000367253 ANAPC5Q9UJX4 755 aa9.34□□□□□ -0.92
SYNE1-206ENST00000367253 PCDHB8Q9UN66 801 aa9.34□□□□□ -0.92
SYNE1-206ENST00000367253 A0A087WUV0 522 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 DDX39AO00148 427 aaKnown RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 CALUO43852 315 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 MYO1EQ12965 1108 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 CNGA4Q8IV77 575 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 NLRP4Q96MN2 994 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 CARD8Q9Y2G2 431 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 MRPS17Q9Y2R5 130 aaKnown RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 RWDD3Q9Y3V2 267 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 BAG2O95816 211 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 C6orf222P0C671 652 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 CA4P22748 312 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 EPHB1P54762 984 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 HAND2P61296 217 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 PHEXP78562 749 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 SF3B3Q15393 1217 aaKnown RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 XKR9Q5GH70 373 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 TRIM50Q86XT4 487 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 STX12Q86Y82 276 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 IFT20Q8IY31 132 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 NAPGQ99747 312 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 SLC28A3Q9HAS3 691 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 THG1LQ9NWX6 298 aaKnown RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 C19orf81C9J6K1 198 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 INO80B-WBP1J3KQ70 363 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 HGSO14964 777 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 APOA4P06727 396 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 KRT2P35908 639 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 PLCD1P51178 756 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 PRMT2P55345 433 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 TWF2Q6IBS0 349 aaKnown RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 ARHGAP18Q8N392 663 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 DDX17Q92841 729 aaKnown RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 NR1H4Q96RI1 486 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 METTL22Q9BUU2 404 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 AGTPBP1Q9UPW5 1226 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 STK38LQ9Y2H1 464 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 KIAA0232Q92628 1395 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 USP17L10C9JJH3 530 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 KPNA6O60684 536 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 MBD4O95243 580 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 KRT14P02533 472 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 CYP2B6P20813 491 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 INPP1P49441 399 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 ST13P50502 369 aaKnown RBP9.33□□□□□ -0.92
SYNE1-206ENST00000367253 MICALL2Q8IY33 904 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 MB21D1Q8N884 522 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 OLFML3Q9NRN5 406 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 DLC1Q96QB1 1528 aa9.33□□□□□ -0.92
SYNE1-206ENST00000367253 TMEM88BA6NKF7 163 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 BTDP43251 543 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 MAGEA9P43362 315 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 CCT2P78371 535 aaKnown RBP9.32□□□□□ -0.92
SYNE1-206ENST00000367253 STXBP2Q15833 593 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 HSP90AA4PQ58FG1 418 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 CEP78Q5JTW2 689 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 IER5Q5VY09 327 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 SKA2Q8WVK7 121 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-206ENST00000367253 CARD6Q9BX69 1037 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 DIS3Q9Y2L1 958 aaKnown RBP9.32□□□□□ -0.92
SYNE1-206ENST00000367253 PCDHGA3Q9Y5H0 932 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 RNASEH1O60930 286 aaKnown RBP9.32□□□□□ -0.92
SYNE1-206ENST00000367253 SYF2O95926 243 aaKnown RBP9.32□□□□□ -0.92
SYNE1-206ENST00000367253 MX2P20592 715 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 GCKRQ14397 625 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 NARFQ9UHQ1 456 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 MCM8Q9UJA3 840 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 CARMIL3Q8ND23 1372 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 ANKARQ7Z5J8 1434 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 TMEM232C9JQI7 657 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 SLC25A27O95847 323 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 FAAH2Q6GMR7 532 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 SV2BQ7L1I2 683 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 ZNF467Q7Z7K2 595 aaPredicted RBP9.32□□□□□ -0.92
SYNE1-206ENST00000367253 SNX32Q86XE0 403 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 GDAP1Q8TB36 358 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 INPP5FQ9Y2H2 1132 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 PIK3C2BO00750 1634 aa9.32□□□□□ -0.92
SYNE1-206ENST00000367253 MAP3K15Q6ZN16 1313 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms