RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CACNA2D4Q7Z3S7 1137 aa23.02■■□□□ 1.28
CCDC88B-203ENST00000359902 MMS19Q96T76 1030 aa23.02■■□□□ 1.28
CCDC88B-203ENST00000359902 VAV3Q9UKW4 847 aa23.02■■□□□ 1.28
CCDC88B-203ENST00000359902 C21orf2O43822 256 aa23.01■■□□□ 1.27
CCDC88B-203ENST00000359902 USO1O60763 962 aaKnown RBP23.01■■□□□ 1.27
CCDC88B-203ENST00000359902 CASP5P51878 434 aa23.01■■□□□ 1.27
CCDC88B-203ENST00000359902 DEF6Q9H4E7 631 aa23.01■■□□□ 1.27
CCDC88B-203ENST00000359902 STK24Q9Y6E0 443 aa23.01■■□□□ 1.27
CCDC88B-203ENST00000359902 SPDYE2BA6NHP3 402 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 MAP2K7O14733 419 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 AKR1B10O60218 316 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 SPDYE6P0CI01 402 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 ADAM9Q13443 819 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 ASTE1Q2TB18 679 aaPredicted RBP23■■□□□ 1.27
CCDC88B-203ENST00000359902 EDRF1Q3B7T1 1238 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 GPIHBP1Q8IV16 184 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 ACER1Q8TDN7 264 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23■■□□□ 1.27
CCDC88B-203ENST00000359902 STAT2P52630 851 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 VSNL1P62760 191 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 HGSNATQ68CP4 663 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 PPP4R3CPQ6ZMV5 832 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 REEP2Q9BRK0 252 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 SH2D4AQ9H788 454 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 ABCB6Q9NP58 842 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 CEP72Q9P209 647 aa23■■□□□ 1.27
CCDC88B-203ENST00000359902 MAPK8IP2Q13387 824 aaPredicted RBP22.99■■□□□ 1.27
CCDC88B-203ENST00000359902 SMC1AQ14683 1233 aaKnown RBP22.99■■□□□ 1.27
CCDC88B-203ENST00000359902 ARHGEF10LQ9HCE6 1279 aa22.99■■□□□ 1.27
CCDC88B-203ENST00000359902 TMOD2Q9NZR1 351 aa22.99■■□□□ 1.27
CCDC88B-203ENST00000359902 TMX2Q9Y320 296 aa22.99■■□□□ 1.27
CCDC88B-203ENST00000359902 SMCHD1A6NHR9 2005 aa22.99■■□□□ 1.27
CCDC88B-203ENST00000359902 CLRN2A0PK11 232 aa22.99■■□□□ 1.27
CCDC88B-203ENST00000359902 ERLIN1O75477 346 aa22.99■■□□□ 1.27
CCDC88B-203ENST00000359902 TUBBP07437 444 aa22.99■■□□□ 1.27
CCDC88B-203ENST00000359902 ZNF76P36508 570 aa22.99■■□□□ 1.27
CCDC88B-203ENST00000359902 FAM83BQ5T0W9 1011 aa22.99■■□□□ 1.27
CCDC88B-203ENST00000359902 NLRC4Q9NPP4 1024 aa22.99■■□□□ 1.27
CCDC88B-203ENST00000359902 GOLGB1Q14789 3259 aaKnown RBP22.99■■□□□ 1.27
CCDC88B-203ENST00000359902 IGLV3-22A0A075B6J6 115 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 RSBN1LQ6PCB5 846 aaPredicted RBP22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 EPM2AIP1Q7L775 607 aaPredicted RBP22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 TRIM58Q8NG06 486 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 SYN2Q92777 582 aaPredicted RBP22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 CAPZA3Q96KX2 299 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 POLR3CQ9BUI4 534 aaPredicted RBP22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 LSM14BQ9BX40 385 aaKnown RBP22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 FAM184BQ9ULE4 1060 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 L1RE1Q9UN81 338 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 SSU72P8A0A1W2PR75 194 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 EML1O00423 815 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 CETN3O15182 167 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 HOXD13P35453 343 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 CYP4A11Q02928 519 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 SLC15A2Q16348 729 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 ZNF771Q7L3S4 317 aaPredicted RBP22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 SFR1Q86XK3 245 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 TBC1D5Q92609 795 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 EIF2AK1Q9BQI3 630 aaKnown RBP22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 NUCKS1Q9H1E3 243 aaKnown RBP22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 MLXIPQ9HAP2 919 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 ZNF70Q9UC06 446 aaPredicted RBP22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 CAPN6Q9Y6Q1 641 aa22.98■■□□□ 1.27
CCDC88B-203ENST00000359902 WDR93Q6P2C0 686 aa22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 FAM151AQ8WW52 585 aa22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 CRACR2AQ9BSW2 395 aa22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 TRAF3IP3Q9Y228 551 aa22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 JRKLQ9Y4A0 524 aa22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 ZNF185O15231 689 aa22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 PJA2O43164 708 aa22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 TLR2O60603 784 aa22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 TACC1O75410 805 aa22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 MAGEA1P43355 309 aa22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 USP14P54578 494 aa22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 CKAP4Q07065 602 aaKnown RBP22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 KNOP1Q1ED39 458 aaKnown RBP22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 RPGRIP1Q96KN7 1286 aa22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 GMLQ99445 158 aa22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 JADE2Q9NQC1 790 aa22.97■■□□□ 1.27
CCDC88B-203ENST00000359902 MOCS3O95396 460 aa22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 NR2F2P24468 414 aa22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 POLR2FP61218 127 aaKnown RBP22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 FAM193AP78312 1265 aa22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 APBA1Q02410 837 aa22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 GFPT1Q06210 699 aaPredicted RBP22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 SFMBT2Q5VUG0 894 aa22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 HDXQ7Z353 690 aa22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 BHMT2Q9H2M3 363 aa22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 GOPCQ9HD26 462 aa22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 RGL1Q9NZL6 768 aa22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 PDE2AO00408 941 aaPredicted RBP22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 RAD17O75943 681 aa22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 CFBP00751 764 aa22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 OAS2P29728 719 aaKnown RBP22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 TRAF1Q13077 416 aa22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 ZBTB21Q9ULJ3 1066 aa22.96■■□□□ 1.27
CCDC88B-203ENST00000359902 CNTNAP1P78357 1384 aa22.95■■□□□ 1.27
CCDC88B-203ENST00000359902 RSPH10B2B2RC85 870 aa22.95■■□□□ 1.26
CCDC88B-203ENST00000359902 POLR3GO15318 223 aaPredicted RBP22.95■■□□□ 1.26
CCDC88B-203ENST00000359902 EYA4O95677 639 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms