RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 HMGCS2P54868 508 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 TSGA10Q9BZW7 698 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 XDHP47989 1333 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 CHL1O00533 1208 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 SLC35F6Q8N357 371 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 PPFIBP2Q8ND30 876 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 ATP8A1Q9Y2Q0 1164 aa7.97□□□□□ -1.13
VPS13A-202ENST00000357409 ALDH3A1P30838 453 aa7.96□□□□□ -1.13
VPS13A-202ENST00000357409 CDC37Q16543 378 aaPredicted RBP7.96□□□□□ -1.13
VPS13A-202ENST00000357409 RNF219Q5W0B1 726 aaPredicted RBP7.96□□□□□ -1.13
VPS13A-202ENST00000357409 AFAP1L1Q8TED9 768 aa7.96□□□□□ -1.13
VPS13A-202ENST00000357409 ARHGAP45Q92619 1136 aa7.96□□□□□ -1.13
VPS13A-202ENST00000357409 FAM136AQ96C01 138 aa7.96□□□□□ -1.13
VPS13A-202ENST00000357409 HEXIM1O94992 359 aaKnown RBP7.96□□□□□ -1.13
VPS13A-202ENST00000357409 CAPRIN1Q14444 709 aaKnown RBP7.96□□□□□ -1.13
VPS13A-202ENST00000357409 DEFB128Q7Z7B8 93 aa7.96□□□□□ -1.13
VPS13A-202ENST00000357409 FAM71BQ8TC56 605 aa7.96□□□□□ -1.13
VPS13A-202ENST00000357409 EPC1Q9H2F5 836 aa7.96□□□□□ -1.13
VPS13A-202ENST00000357409 IPO11Q9UI26 975 aaKnown RBP7.96□□□□□ -1.13
VPS13A-202ENST00000357409 IVLP07476 585 aa7.96□□□□□ -1.13
VPS13A-202ENST00000357409 YWHAHQ04917 246 aaPredicted RBP7.96□□□□□ -1.13
VPS13A-202ENST00000357409 KCTD19Q17RG1 926 aaPredicted RBP7.96□□□□□ -1.13
VPS13A-202ENST00000357409 RAPGEF5Q92565 580 aa7.96□□□□□ -1.13
VPS13A-202ENST00000357409 RMDN3Q96TC7 470 aa7.96□□□□□ -1.13
VPS13A-202ENST00000357409 NDFIP2Q9NV92 336 aa7.96□□□□□ -1.13
VPS13A-202ENST00000357409 CNOT7Q9UIV1 285 aaKnown RBP7.96□□□□□ -1.13
VPS13A-202ENST00000357409 TNPO2O14787 897 aaKnown RBP7.96□□□□□ -1.14
VPS13A-202ENST00000357409 KRT1P04264 644 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 GRIK1P39086 918 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 GCLMP48507 274 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 BCAR1P56945 870 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 ADCK2Q7Z695 626 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 YAF2Q8IY57 180 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 STAG2Q8N3U4 1231 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 PDCD7Q8N8D1 485 aaKnown RBP7.96□□□□□ -1.14
VPS13A-202ENST00000357409 SLC13A1Q9BZW2 595 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 CD209Q9NNX6 404 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 ACOT2P49753 483 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 E2F5Q15329 346 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 MUM1L1Q5H9M0 696 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 CYB5R4Q7L1T6 521 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 DEPDC1BQ8WUY9 529 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 EPB41L5Q9HCM4 733 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 PCDHA7Q9UN72 937 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 NCAPD3P42695 1498 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 A8MX80 341 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 COL9A2Q14055 689 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-202ENST00000357409 SLMAPQ14BN4 828 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 GSPT2Q8IYD1 628 aaKnown RBP7.96□□□□□ -1.14
VPS13A-202ENST00000357409 MSTO1Q9BUK6 570 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 ALG13Q9NP73 1137 aaKnown RBP7.96□□□□□ -1.14
VPS13A-202ENST00000357409 MINPP1Q9UNW1 487 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 SYNJ1O43426 1573 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 MXD4Q14582 209 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-202ENST00000357409 CCDC85BQ15834 202 aaPredicted RBP7.96□□□□□ -1.14
VPS13A-202ENST00000357409 OR6J1Q8NGC5 347 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 GABBR1Q9UBS5 961 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 CLTAP09496 248 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 MTMR1Q13613 665 aa7.96□□□□□ -1.14
VPS13A-202ENST00000357409 RGS16O15492 202 aaPredicted RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 ANXA13P27216 316 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 OAS2P29728 719 aaKnown RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 ZNF568Q3ZCX4 644 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 THEMIS2Q5TEJ8 643 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 HDXQ7Z353 690 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 CERS3Q8IU89 383 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 IFT20Q8IY31 132 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 IFT43Q96FT9 208 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 NACC1Q96RE7 527 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 RGL1Q9NZL6 768 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 PNMA8BQ9ULN7 279 aaPredicted RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 PCDHA5Q9Y5H7 936 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 ERVV-2B6SEH9 535 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 AXIN1O15169 862 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 INHBAP08476 426 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 ADD2P35612 726 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 ZNF75DP51815 510 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 ARID5BQ14865 1188 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 KIF19Q2TAC6 998 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 MLKLQ8NB16 471 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 RABGGTAQ92696 567 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 KAT2BQ92831 832 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 ZKSCAN4Q969J2 545 aaPredicted RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 MASTLQ96GX5 879 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 RPAP3Q9H6T3 665 aaPredicted RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 KDM5BQ9UGL1 1544 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 SCAMP3O14828 347 aaKnown RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 EVI5O60447 810 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 CELF2O95319 508 aaKnown RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 RFX3P48380 749 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 GLRA4Q5JXX5 417 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 FASTKD5Q7L8L6 764 aaKnown RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 UBA3Q8TBC4 463 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 PPWD1Q96BP3 646 aaKnown RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 TYW5A2RUC4 315 aaKnown RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 SOWAHDA6NJG2 315 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 PLA2G4BP0C869 781 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 PSMC2P35998 433 aaKnown RBP7.95□□□□□ -1.14
VPS13A-202ENST00000357409 B4GALNT4Q76KP1 1039 aa7.95□□□□□ -1.14
VPS13A-202ENST00000357409 ACSF2Q96CM8 615 aaPredicted RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms