RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 DDX5P17844 614 aaKnown RBP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 SERPINB8P50452 374 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 FOXP1Q9H334 677 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 RASA4BC9J798 803 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 RASA4O43374 803 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 CCNT1O60563 726 aaKnown RBP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 MFAP3LO75121 409 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 SOX6P35712 828 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 HSPA2P54652 639 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 ROR2Q01974 943 aaKnown RBP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 MYD88Q99836 296 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 ELAC2Q9BQ52 826 aaKnown RBP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 MAGI1Q96QZ7 1491 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 SAC3D1A6NKF1 404 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 M0R3G1 203 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 STX7O15400 261 aaKnown RBP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 PRPF18Q99633 342 aaKnown RBP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 BHMT2Q9H2M3 363 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 MRPL44Q9H9J2 332 aaKnown RBP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 SUCLA2Q9P2R7 463 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 BNC1Q01954 994 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 CAPRIN1Q14444 709 aaKnown RBP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 SLC39A14Q15043 492 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 MEIS3Q99687 375 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 GGA2Q9UJY4 613 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 LSP1P33241 339 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 KRT76Q01546 638 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 KLHL12Q53G59 568 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 IKBIPQ70UQ0 350 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 FAM81AQ8TBF8 368 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 STOML2Q9UJZ1 356 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 CCPG1Q9ULG6 757 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 H0Y3Z8 333 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 TPP2P29144 1249 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-203ENST00000353578 ZCWPW2Q504Y3 356 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 PRUNE1Q86TP1 453 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 TRIM50Q86XT4 487 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 TRPV6Q9H1D0 765 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 ZBTB18Q99592 522 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 NFU1Q9UMS0 254 aa13.53□□□□□ -0.24
COL6A3-203ENST00000353578 ESYT2A0FGR8 921 aa13.52□□□□□ -0.24
COL6A3-203ENST00000353578 SMAPO00193 183 aa13.52□□□□□ -0.24
COL6A3-203ENST00000353578 TMC5Q6UXY8 1006 aa13.52□□□□□ -0.24
COL6A3-203ENST00000353578 SPATA21Q7Z572 469 aa13.52□□□□□ -0.24
COL6A3-203ENST00000353578 DIS3L2Q8IYB7 885 aaKnown RBP13.52□□□□□ -0.24
COL6A3-203ENST00000353578 ZSWIM6Q9HCJ5 1215 aa13.52□□□□□ -0.24
COL6A3-203ENST00000353578 RNF103-CHMP3A0A140T963 221 aa13.52□□□□□ -0.24
COL6A3-203ENST00000353578 GJA8P48165 433 aa13.52□□□□□ -0.24
COL6A3-203ENST00000353578 PLTPP55058 493 aa13.52□□□□□ -0.24
COL6A3-203ENST00000353578 YTHDF3Q7Z739 585 aaKnown RBP13.52□□□□□ -0.24
COL6A3-203ENST00000353578 REXO1Q8N1G1 1221 aaKnown RBP13.52□□□□□ -0.24
COL6A3-203ENST00000353578 PROM2Q8N271 834 aa13.52□□□□□ -0.24
COL6A3-203ENST00000353578 SCYL1Q96KG9 808 aa13.52□□□□□ -0.24
COL6A3-203ENST00000353578 L3MBTL1Q9Y468 752 aa13.52□□□□□ -0.24
COL6A3-203ENST00000353578 TMEM247A6NEH6 219 aa13.52□□□□□ -0.24
COL6A3-203ENST00000353578 RPN1P04843 607 aaKnown RBP13.52□□□□□ -0.24
COL6A3-203ENST00000353578 CRELD2Q6UXH1 353 aaPredicted RBP13.52□□□□□ -0.24
COL6A3-203ENST00000353578 TRMT10CQ7L0Y3 403 aaKnown RBP13.52□□□□□ -0.24
COL6A3-203ENST00000353578 RSL24D1Q9UHA3 163 aaKnown RBP13.52□□□□□ -0.24
COL6A3-203ENST00000353578 CDV3Q9UKY7 258 aaKnown RBP13.52□□□□□ -0.24
COL6A3-203ENST00000353578 POLR2EP19388 210 aaKnown RBP13.52□□□□□ -0.24
COL6A3-203ENST00000353578 MAGOHP61326 146 aaKnown RBP13.52□□□□□ -0.24
COL6A3-203ENST00000353578 KLC2Q9H0B6 622 aa13.52□□□□□ -0.24
COL6A3-203ENST00000353578 PPARGC1AQ9UBK2 798 aaKnown RBP13.52□□□□□ -0.24
COL6A3-203ENST00000353578 CIDEBQ9UHD4 219 aa13.52□□□□□ -0.24
COL6A3-203ENST00000353578 MYO1FO00160 1098 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 ASNA1O43681 348 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 TBC1D4O60343 1298 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 MYCNP04198 464 aaPredicted RBP13.52□□□□□ -0.25
COL6A3-203ENST00000353578 PFASO15067 1338 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 H3BRJ5 948 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 CAPN9O14815 690 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 ALCAMQ13740 583 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 TRIM59Q8IWR1 403 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 ZBTB10Q96DT7 871 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 GCOM2Q9BZD3 368 aaPredicted RBP13.52□□□□□ -0.25
COL6A3-203ENST00000353578 KIF17Q9P2E2 1029 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 RGS2P41220 211 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 TMCO4Q5TGY1 634 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 PPP4R4Q6NUP7 873 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 RABGEF1Q9UJ41 708 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 MAP3K13O43283 966 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 TCP11X2Q5H9J9 407 aa13.52□□□□□ -0.25
COL6A3-203ENST00000353578 CYTH2Q99418 400 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 APOL4Q9BPW4 351 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 MTO1Q9Y2Z2 717 aaKnown RBP13.51□□□□□ -0.25
COL6A3-203ENST00000353578 ARL4CP56559 192 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 SLC9C2Q5TAH2 1124 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 KRT40Q6A162 431 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 CYB5D1Q6P9G0 228 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 BTBD6Q96KE9 485 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 PGM1P36871 562 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 NOD2Q9HC29 1040 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 PCDHA7Q9UN72 937 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 PI4KAP2A4QPH2 592 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 hCG_1984214I3L0E3 225 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 TAB1Q15750 504 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 KRT27Q7Z3Y8 459 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 PI4KAP1Q8N8J0 262 aa13.51□□□□□ -0.25
COL6A3-203ENST00000353578 RPS6KC1Q96S38 1066 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms