RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CES2O00748 559 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 CEP104O60308 925 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 SHBGP04278 402 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 FGRP09769 529 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 SLC5A1P13866 664 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 CHN1P15882 459 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 SARNPP82979 210 aaKnown RBP7.44□□□□□ -1.22
VPS39-202ENST00000348544 DHX9Q08211 1270 aaKnown RBP7.44□□□□□ -1.22
VPS39-202ENST00000348544 MTMR3Q13615 1198 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 ZNF268Q14587 947 aaPredicted RBP7.44□□□□□ -1.22
VPS39-202ENST00000348544 SLC18A3Q16572 532 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 SLC35G1Q2M3R5 365 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 SLC9C1Q4G0N8 1177 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 FAM133BQ5BKY9 247 aaKnown RBP7.44□□□□□ -1.22
VPS39-202ENST00000348544 FAM83BQ5T0W9 1011 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 SFMBT2Q5VUG0 894 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 MIS18BP1Q6P0N0 1132 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 LRRC34Q8IZ02 419 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 ACTRT1Q8TDG2 376 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 PARD3BQ8TEW8 1205 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 PRCCQ92733 491 aaPredicted RBP7.44□□□□□ -1.22
VPS39-202ENST00000348544 CCDC47Q96A33 483 aaKnown RBP7.44□□□□□ -1.22
VPS39-202ENST00000348544 SPAG5Q96R06 1193 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 RIOK1Q9BRS2 568 aaKnown RBP7.44□□□□□ -1.22
VPS39-202ENST00000348544 MMTAG2Q9BU76 263 aaKnown RBP7.44□□□□□ -1.22
VPS39-202ENST00000348544 TXLNGYQ9BZA5 131 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 CELF4Q9BZC1 486 aaKnown RBP7.44□□□□□ -1.22
VPS39-202ENST00000348544 EDEM3Q9BZQ6 932 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 CUEDC2Q9H467 287 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 SLC5A4Q9NY91 659 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 CEP72Q9P209 647 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 LRP2BPQ9P2M1 347 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 SWAP70Q9UH65 585 aa7.44□□□□□ -1.22
VPS39-202ENST00000348544 NOC2LQ9Y3T9 749 aaKnown RBP7.44□□□□□ -1.22
VPS39-202ENST00000348544 ABCB11O95342 1321 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 AFF2P51816 1311 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 NHSL1Q5SYE7 1610 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 MYH4Q9Y623 1939 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 A0A0G2JS52 829 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 CCDC194A0A1B0GVG4 234 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 KLHL33A6NCF5 533 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 A8MUI8 341 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 TTI1O43156 1089 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 DIAPH2O60879 1101 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 MMEP08473 750 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 CALML3P27482 149 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 ALDH5A1P51649 535 aaPredicted RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 USP11P51784 963 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 NCALDP61601 193 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 DYNLL1P63167 89 aaKnown RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 ARID5AQ03989 594 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 ICA1Q05084 483 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 ITIH4Q14624 930 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 RPS6KA1Q15418 735 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 ENOX2Q16206 610 aaKnown RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 FAM47AQ5JRC9 791 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 CNNM4Q6P4Q7 775 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 GIGYF2Q6Y7W6 1299 aaKnown RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 SPICE1Q8N0Z3 855 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 LRRC57Q8N9N7 239 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 ATP8B4Q8TF62 1192 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 SEC14L1Q92503 715 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 CNOT10Q9H9A5 744 aaKnown RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 MAGEF1Q9HAY2 307 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 ADAMTS1Q9UHI8 967 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.43□□□□□ -1.22
VPS39-202ENST00000348544 ANKRD33BA6NCL7 494 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 MYMKA6NI61 221 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 ENO4A6NNW6 628 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 ASAP2O43150 1006 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 CALRP27797 417 aaKnown RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 PPP1R2P41236 205 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 ABL2P42684 1182 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 POLR2FP61218 127 aaKnown RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 MAP2K1Q02750 393 aaPredicted RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 UBAP2Q5T6F2 1119 aaKnown RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 CAPRIN2Q6IMN6 1127 aaKnown RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 KIF6Q6ZMV9 814 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 TRPM8Q7Z2W7 1104 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 METTL13Q8N6R0 699 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 CABLES1Q8TDN4 633 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 MICAL1Q8TDZ2 1067 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 TAF4BQ92750 862 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 SYN2Q92777 582 aaPredicted RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 CALR3Q96L12 384 aaKnown RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 ELAC2Q9BQ52 826 aaKnown RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.43□□□□□ -1.22
VPS39-202ENST00000348544 LSM14BQ9BX40 385 aaKnown RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 DPH5Q9H2P9 285 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 KANSL2Q9H9L4 492 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 NOP53Q9NZM5 478 aaKnown RBP7.43□□□□□ -1.22
VPS39-202ENST00000348544 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.43□□□□□ -1.22
VPS39-202ENST00000348544 MROH5Q6ZUA9 1318 aa7.43□□□□□ -1.22
VPS39-202ENST00000348544 KIF13AQ9H1H9 1805 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 MAGEB6P1A0A0J9YX57 407 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 CFAP73A6NFT4 308 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 PGRMC1O00264 195 aaKnown RBP7.42□□□□□ -1.22
VPS39-202ENST00000348544 PPFIA2O75334 1257 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 UBOX5O94941 541 aa7.42□□□□□ -1.22
VPS39-202ENST00000348544 RARAP10276 462 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms