RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 REEP2Q9BRK0 252 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 DNM3Q9UQ16 869 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 CLIC2O15247 247 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 MATR3P43243 847 aaKnown RBP eCLIP11.44□□□□□ -0.58
LIMA1-201ENST00000341247 VSNL1P62760 191 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 KCNA1Q09470 495 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 TCERG1LQ5VWI1 586 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 KSR1Q8IVT5 923 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 SMARCAL1Q9NZC9 954 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.44□□□□□ -0.58
LIMA1-201ENST00000341247 SAR1BQ9Y6B6 198 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 CAPN6Q9Y6Q1 641 aa11.44□□□□□ -0.58
LIMA1-201ENST00000341247 MYBP10242 640 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 STAT2P52630 851 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 AMPD2Q01433 879 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 AEBP2Q6ZN18 517 aaPredicted RBP11.43□□□□□ -0.58
LIMA1-201ENST00000341247 SLFN12Q8IYM2 578 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 LENG9Q96B70 501 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.43□□□□□ -0.58
LIMA1-201ENST00000341247 ABCB6Q9NP58 842 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 EIF3CLB5ME19 914 aaKnown RBP11.43□□□□□ -0.58
LIMA1-201ENST00000341247 SPATA31C1P0DKV0 1188 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 ACTN1P12814 892 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 NR2F2P24468 414 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 RASSF7Q02833 373 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 PSMD2Q13200 908 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 DGKZQ13574 1117 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 RAPGEF1Q13905 1077 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 DCAF17Q5H9S7 520 aaPredicted RBP11.43□□□□□ -0.58
LIMA1-201ENST00000341247 HAUS3Q68CZ6 603 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 OGFOD1Q8N543 542 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 SECISBP2LQ93073 1101 aaKnown RBP11.43□□□□□ -0.58
LIMA1-201ENST00000341247 EIF3CQ99613 913 aaKnown RBP11.43□□□□□ -0.58
LIMA1-201ENST00000341247 PCDHA13Q9Y5I0 950 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 POLD1P28340 1107 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 SLC12A3P55017 1021 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 HDLBPQ00341 1268 aaKnown RBP11.43□□□□□ -0.58
LIMA1-201ENST00000341247 SPIRE1Q08AE8 756 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 AP3B2Q13367 1082 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 PLS1Q14651 629 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 PTPROQ16827 1216 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 ZNF772Q68DY9 489 aaPredicted RBP11.43□□□□□ -0.58
LIMA1-201ENST00000341247 MAEAQ7L5Y9 396 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 ERMNQ8TAM6 284 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 RUSC1Q9BVN2 902 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 PLAGL2Q9UPG8 496 aa11.43□□□□□ -0.58
LIMA1-201ENST00000341247 DNAH12Q6ZR08 3092 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 NCK2O43639 380 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 SEMA3FQ13275 785 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 WHAMMP3Q1A5X7 153 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 PLEKHA4Q9H4M7 779 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 EHD2Q9NZN4 543 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 MYO1AQ9UBC5 1043 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 ZNF70Q9UC06 446 aaPredicted RBP11.42□□□□□ -0.58
LIMA1-201ENST00000341247 SPDYE2BA6NHP3 402 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 GCNT3O95395 438 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 EGFRP00533 1210 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 SPDYE6P0CI01 402 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 OAS2P29728 719 aaKnown RBP11.42□□□□□ -0.58
LIMA1-201ENST00000341247 MAGEA1P43355 309 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 VAV2P52735 878 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 GIT2Q14161 759 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 ZCWPW2Q504Y3 356 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 TRAPPC11Q7Z392 1133 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 GSPT2Q8IYD1 628 aaKnown RBP11.42□□□□□ -0.58
LIMA1-201ENST00000341247 GMCL1P1Q8NEA9 526 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 GMCL1Q96IK5 515 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 GLT8D2Q9H1C3 349 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 ARHGEF10LQ9HCE6 1279 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 PPP1R1BQ9UD71 204 aaPredicted RBP11.42□□□□□ -0.58
LIMA1-201ENST00000341247 PCDHA2Q9Y5H9 948 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 CEP350Q5VT06 3117 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 ENTPD3O75355 529 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 TERF2Q15554 542 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 CCDC170Q8IYT3 715 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 EIF2AK1Q9BQI3 630 aaKnown RBP11.42□□□□□ -0.58
LIMA1-201ENST00000341247 WDR18Q9BV38 432 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 HOMER2Q9NSB8 354 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 FAM53CQ9NYF3 392 aa11.42□□□□□ -0.58
LIMA1-201ENST00000341247 PDE2AO00408 941 aaPredicted RBP11.41□□□□□ -0.58
LIMA1-201ENST00000341247 SREBF1P36956 1147 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 C2orf54Q08AI8 447 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 SMC1AQ14683 1233 aaKnown RBP11.41□□□□□ -0.58
LIMA1-201ENST00000341247 COBLL1Q53SF7 1204 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 FAM133AQ8N9E0 248 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 BAP1Q92560 729 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 NAP1L4Q99733 375 aaKnown RBP11.41□□□□□ -0.58
LIMA1-201ENST00000341247 SH2D3AQ9BRG2 576 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 MRIQ9BWK5 157 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 FUT8Q9BYC5 575 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 GTPBP4Q9BZE4 634 aaKnown RBP11.41□□□□□ -0.58
LIMA1-201ENST00000341247 STK32BQ9NY57 414 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 SALL4Q9UJQ4 1053 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 PCDHB13Q9Y5F0 798 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 CYP3A7-CYP3A51PA0A087WV96 503 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 USO1O60763 962 aaKnown RBP11.41□□□□□ -0.58
LIMA1-201ENST00000341247 CYP3A7P24462 503 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 PDXDC1Q6P996 788 aa11.41□□□□□ -0.58
LIMA1-201ENST00000341247 RSBN1LQ6PCB5 846 aaPredicted RBP11.41□□□□□ -0.58
LIMA1-201ENST00000341247 CPXCR1Q8N123 301 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms