RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 IKBKBO14920 756 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 SLITRK3O94933 977 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 RHOBTB3O94955 611 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 CCNE2O96020 404 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 CETPP11597 493 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 IDEP14735 1019 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 CCND2P30279 289 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 PMS1P54277 932 aaKnown RBP4.63□□□□□ -1.67
MCF2-201ENST00000338585 SLC12A3P55017 1021 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 HUNKP57058 714 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 PDE4DQ08499 809 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 STK4Q13043 487 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 ARSHQ5FYA8 562 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 ZNF658Q5TYW1 1059 aaPredicted RBP4.63□□□□□ -1.67
MCF2-201ENST00000338585 WDR78Q5VTH9 848 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 GPBP1Q86WP2 473 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 SPC24Q8NBT2 197 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 BANK1Q8NDB2 785 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 GLIS3Q8NEA6 775 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 PIGOQ8TEQ8 1089 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 SMCR8Q8TEV9 937 aaPredicted RBP4.63□□□□□ -1.67
MCF2-201ENST00000338585 DNAJC19Q96DA6 116 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 FGD4Q96M96 766 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 INPP4AQ96PE3 977 aaPredicted RBP4.63□□□□□ -1.67
MCF2-201ENST00000338585 POLR3CQ9BUI4 534 aaPredicted RBP4.63□□□□□ -1.67
MCF2-201ENST00000338585 NT5C3AQ9H0P0 336 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 EFCC1Q9HA90 598 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 POLD4Q9HCU8 107 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 SAMSN1Q9NSI8 373 aaKnown RBP4.63□□□□□ -1.67
MCF2-201ENST00000338585 NFE2L3Q9Y4A8 694 aa4.63□□□□□ -1.67
MCF2-201ENST00000338585 TRIM49BA6NDI0 452 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 SMTNL1A8MU46 457 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 MYL1P05976 194 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 CYP11B2P19099 503 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 ERCC5P28715 1186 aaPredicted RBP4.62□□□□□ -1.67
MCF2-201ENST00000338585 ALDH5A1P51649 535 aaPredicted RBP4.62□□□□□ -1.67
MCF2-201ENST00000338585 GTF2A2P52657 109 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 ERVK-9P63128 1117 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 ERVK-24P63145 666 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 AMPD3Q01432 767 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 SP4Q02446 784 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 KCNB1Q14721 858 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 PTPN21Q16825 1174 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 SARM1Q6SZW1 724 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 EEPD1Q7L9B9 569 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 MIER3Q7Z3K6 550 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 ANKRD13CQ8N6S4 541 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 KIAA0895Q8NCT3 520 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 GIMAP8Q8ND71 665 aaPredicted RBP4.62□□□□□ -1.67
MCF2-201ENST00000338585 SLAIN1Q8ND83 568 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 FGFBP2Q9BYJ0 223 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 BHMT2Q9H2M3 363 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 SLC39A2Q9NP94 309 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 EXOC1Q9NV70 894 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 RMND1Q9NWS8 449 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 FBXO40Q9UH90 709 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 DACH1Q9UI36 760 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 PFASO15067 1338 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 SYNRGQ9UMZ2 1314 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 KIAA1217Q5T5P2 1943 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 TMEM150BA6NC51 233 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 ECM2O94769 699 aaPredicted RBP4.62□□□□□ -1.67
MCF2-201ENST00000338585 KCNA2P16389 499 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 SP2Q02086 613 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 LRRC41Q15345 812 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 EPHA7Q15375 998 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 UGCGQ16739 394 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 XRRA1Q6P2D8 792 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 UNC13DQ70J99 1090 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 TRMT1LQ7Z2T5 733 aaKnown RBP4.62□□□□□ -1.67
MCF2-201ENST00000338585 ADSSL1Q8N142 457 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 FAM133AQ8N9E0 248 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 ENOX1Q8TC92 643 aaKnown RBP4.62□□□□□ -1.67
MCF2-201ENST00000338585 NELFBQ8WX92 580 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 GPRASP2Q96D09 838 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 SH2D3AQ9BRG2 576 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 LXNQ9BS40 222 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 RUSC1Q9BVN2 902 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 TUFT1Q9NNX1 390 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 TBC1D7Q9P0N9 293 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 IFNKQ9P0W0 207 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 NRBP1Q9UHY1 535 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 PNMA3Q9UL41 463 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 DNM3Q9UQ16 869 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 SAMM50Q9Y512 469 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 DOCK5Q9H7D0 1870 aa4.62□□□□□ -1.67
MCF2-201ENST00000338585 TRPM7Q96QT4 1865 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 RSPH10B2B2RC85 870 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 SPATA31C2B4DYI2 1134 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 SLC26A4O43511 780 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 EYA4O95677 639 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 SLC25A27O95847 323 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 RSPH10BP0C881 870 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 ZBTB48P10074 688 aaPredicted RBP4.61□□□□□ -1.67
MCF2-201ENST00000338585 ZNF18P17022 549 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 ZNF157P51786 506 aaPredicted RBP4.61□□□□□ -1.67
MCF2-201ENST00000338585 FANCCQ00597 558 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 EHHADHQ08426 723 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 COASYQ13057 564 aa4.61□□□□□ -1.67
MCF2-201ENST00000338585 PAK1Q13153 545 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms