RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 C16orf70Q9BSU1 422 aa17.99■□□□□ 0.47
CCDC28A-201ENST00000332797 NR2E3Q9Y5X4 410 aa17.99■□□□□ 0.47
CCDC28A-201ENST00000332797 WNT7AO00755 349 aa17.98■□□□□ 0.47
CCDC28A-201ENST00000332797 KIAA0753Q2KHM9 967 aa17.98■□□□□ 0.47
CCDC28A-201ENST00000332797 LRCH2Q5VUJ6 765 aa17.98■□□□□ 0.47
CCDC28A-201ENST00000332797 ANKRD33Q7Z3H0 272 aa17.98■□□□□ 0.47
CCDC28A-201ENST00000332797 POTEDQ86YR6 584 aa17.98■□□□□ 0.47
CCDC28A-201ENST00000332797 TEKT3Q9BXF9 490 aa17.98■□□□□ 0.47
CCDC28A-201ENST00000332797 SEZ6LQ9BYH1 1024 aa17.98■□□□□ 0.47
CCDC28A-201ENST00000332797 ZNF215Q9UL58 517 aaPredicted RBP17.98■□□□□ 0.47
CCDC28A-201ENST00000332797 VPS37CA5D8V6 355 aaPredicted RBP17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 DCDC2CA8MYV0 355 aa17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 H3BRB1 525 aa17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 CHMP2AO43633 222 aa17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 MARCH6O60337 910 aa17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 PDCP20941 246 aa17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 KRT76Q01546 638 aa17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 NFRKBQ6P4R8 1299 aa17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 FAM126BQ8IXS8 530 aa17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 GLG1Q92896 1179 aa17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 TOX2Q96NM4 488 aa17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 RIT2Q99578 217 aa17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 TUT1Q9H6E5 874 aaKnown RBP17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 PRDM5Q9NQX1 630 aaPredicted RBP17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 ZMYND8Q9ULU4 1186 aaPredicted RBP17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 NOL7Q9UMY1 257 aaKnown RBP17.97■□□□□ 0.47
CCDC28A-201ENST00000332797 HAS3O00219 553 aa17.96■□□□□ 0.47
CCDC28A-201ENST00000332797 TLR3O15455 904 aaKnown RBP17.96■□□□□ 0.47
CCDC28A-201ENST00000332797 CLTBP09497 229 aa17.96■□□□□ 0.47
CCDC28A-201ENST00000332797 ZNF746Q6NUN9 644 aaPredicted RBP17.96■□□□□ 0.47
CCDC28A-201ENST00000332797 C7orf31Q8N865 590 aa17.96■□□□□ 0.47
CCDC28A-201ENST00000332797 AZI2Q9H6S1 392 aa17.96■□□□□ 0.47
CCDC28A-201ENST00000332797 KCNMB3Q9NPA1 279 aa17.96■□□□□ 0.47
CCDC28A-201ENST00000332797 PDLIM7Q9NR12 457 aa17.96■□□□□ 0.47
CCDC28A-201ENST00000332797 EMSYQ7Z589 1322 aa17.96■□□□□ 0.47
CCDC28A-201ENST00000332797 NEMFO60524 1076 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 PSMD10O75832 226 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 SUPT20HL2P0C7V6 817 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 SYN1P17600 705 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 MCM7P33993 719 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 PTPN11Q06124 597 aaPredicted RBP17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 FAAP100Q0VG06 881 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 TTC38Q5R3I4 469 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 MIS18BP1Q6P0N0 1132 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 ABHD15Q6UXT9 468 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 SMAP1Q8IYB5 467 aaPredicted RBP17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 SPRYD3Q8NCJ5 442 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 PCYT2Q99447 389 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 TRPV6Q9H1D0 765 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 UNC45AQ9H3U1 944 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 SMARCAD1Q9H4L7 1026 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 TRMT13Q9NUP7 481 aaKnown RBP17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 PCDH10Q9P2E7 1040 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 HDAC6Q9UBN7 1215 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 PRKAG2Q9UGJ0 569 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 SAMM50Q9Y512 469 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 WDR64B1ANS9 1081 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 H0YGN5 161 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 BACH1O14867 736 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 TBX3O15119 743 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 B4GALT4O60513 344 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 LGR5O75473 907 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 ATG7O95352 703 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 BAG4O95429 457 aaKnown RBP17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 SYT1P21579 422 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 MARK3P27448 753 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 TRAPPC10P48553 1259 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 ZNF174Q15697 407 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 CALCRLQ16602 461 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 SH3RF1Q7Z6J0 888 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 HAS1Q92839 578 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 FAM20AQ96MK3 541 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 ERAP1Q9NZ08 941 aa17.95■□□□□ 0.46
CCDC28A-201ENST00000332797 PDE4DIPQ5VU43 2346 aa17.94■□□□□ 0.46
CCDC28A-201ENST00000332797 CD4P01730 458 aa17.94■□□□□ 0.46
CCDC28A-201ENST00000332797 PSAPP07602 524 aa17.94■□□□□ 0.46
CCDC28A-201ENST00000332797 SMIM10L2AP0DMW4 78 aa17.94■□□□□ 0.46
CCDC28A-201ENST00000332797 SMIM10L2BP0DMW5 78 aa17.94■□□□□ 0.46
CCDC28A-201ENST00000332797 NBR1Q14596 966 aa17.94■□□□□ 0.46
CCDC28A-201ENST00000332797 FAM160B1Q5W0V3 765 aa17.94■□□□□ 0.46
CCDC28A-201ENST00000332797 SESTD1Q86VW0 696 aa17.94■□□□□ 0.46
CCDC28A-201ENST00000332797 CCDC60Q8IWA6 550 aaPredicted RBP17.94■□□□□ 0.46
CCDC28A-201ENST00000332797 DISC1Q9NRI5 854 aa17.94■□□□□ 0.46
CCDC28A-201ENST00000332797 TMEM39AQ9NV64 488 aa17.94■□□□□ 0.46
CCDC28A-201ENST00000332797 NOD1Q9Y239 953 aa17.94■□□□□ 0.46
CCDC28A-201ENST00000332797 PCDHA10Q9Y5I2 948 aa17.94■□□□□ 0.46
CCDC28A-201ENST00000332797 SFNP31947 248 aa17.93■□□□□ 0.46
CCDC28A-201ENST00000332797 STAT5BP51692 787 aa17.93■□□□□ 0.46
CCDC28A-201ENST00000332797 JAK3P52333 1124 aa17.93■□□□□ 0.46
CCDC28A-201ENST00000332797 GDF6Q6KF10 455 aaPredicted RBP17.93■□□□□ 0.46
CCDC28A-201ENST00000332797 SWSAP1Q6NVH7 229 aa17.93■□□□□ 0.46
CCDC28A-201ENST00000332797 MIER3Q7Z3K6 550 aa17.93■□□□□ 0.46
CCDC28A-201ENST00000332797 FERMT3Q86UX7 667 aa17.93■□□□□ 0.46
CCDC28A-201ENST00000332797 SLFN12Q8IYM2 578 aa17.93■□□□□ 0.46
CCDC28A-201ENST00000332797 RNPEPQ9H4A4 650 aa17.93■□□□□ 0.46
CCDC28A-201ENST00000332797 ZNF302Q9NR11 478 aa17.93■□□□□ 0.46
CCDC28A-201ENST00000332797 GTF2IRD1Q9UHL9 959 aa17.93■□□□□ 0.46
CCDC28A-201ENST00000332797 VAV3Q9UKW4 847 aa17.93■□□□□ 0.46
CCDC28A-201ENST00000332797 IGKV6D-21A0A0A0MT36 114 aa17.92■□□□□ 0.46
CCDC28A-201ENST00000332797 TRIM43BA6NCK2 446 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms