RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 EML1O00423 815 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 SLC26A4O43511 780 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 RHOXF2BP0C7M4 288 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 UBXN2AP68543 259 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 SPA17Q15506 151 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 NEK11Q8NG66 645 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 CEP63Q96MT8 703 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 CAMKK2Q96RR4 588 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 GMLQ99445 158 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 RHOXF2Q9BQY4 288 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 CRACR2AQ9BSW2 395 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 BCAS3Q9H6U6 928 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 ARFGAP3Q9NP61 516 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 RGL1Q9NZL6 768 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 PITPNM2Q9BZ72 1349 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 PSME4Q14997 1843 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 PIK3CDO00329 1044 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 VIL1P09327 827 aaKnown RBP16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 KIF11P52732 1056 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 VAV2P52735 878 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 APBA1Q02410 837 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 CACNA2D4Q7Z3S7 1137 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 SFR1Q86XK3 245 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 OGFOD1Q8N543 542 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 SYT2Q8N9I0 419 aaPredicted RBP16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 NOA1Q8NC60 698 aaKnown RBP16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 BHMT2Q9H2M3 363 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 DEF6Q9H4E7 631 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 NLRC4Q9NPP4 1024 aa16.43■□□□□ 0.22
CLCNKA-201ENST00000331433 UTRNP46939 3433 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 DMTNQ08495 405 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 KIF5AQ12840 1032 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 ADAM9Q13443 819 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 EHBP1Q8NDI1 1231 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 ZFP91Q96JP5 570 aaPredicted RBP16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 WDR18Q9BV38 432 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 IFIH1Q9BYX4 1025 aaKnown RBP16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 GOPCQ9HD26 462 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 IGLV3-22A0A075B6J6 115 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 RSPH10B2B2RC85 870 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 CYP3A4P08684 503 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 RSPH10BP0C881 870 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 SPDYE2Q495Y8 402 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 PDXDC1Q6P996 788 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 TRIM59Q8IWR1 403 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 EIF2AK1Q9BQI3 630 aaKnown RBP16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 RUSC1Q9BVN2 902 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 GLIS2Q9BZE0 524 aaPredicted RBP16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 HDAC9Q9UKV0 1011 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 SYNPO2Q9UMS6 1093 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 PCDHA13Q9Y5I0 950 aa16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.42■□□□□ 0.22
CLCNKA-201ENST00000331433 RGPD3A6NKT7 1758 aaPredicted RBP16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 RGPD4Q7Z3J3 1758 aa16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 CHMP2AO43633 222 aa16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 AKR1B10O60218 316 aa16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 NOL4O94818 638 aa16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 CAPZA3Q96KX2 299 aa16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 PURBQ96QR8 312 aaKnown RBP16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 LSM14BQ9BX40 385 aaKnown RBP16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 SCAF8Q9UPN6 1271 aaKnown RBP16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 SAR1BQ9Y6B6 198 aa16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 CCDC151A5D8V7 595 aa16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 KIF20AO95235 890 aa16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 MYBP10242 640 aa16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 NR2F2P24468 414 aa16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 PAPD7Q5XG87 772 aaKnown RBP16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 RTKN2Q8IZC4 609 aa16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 MSANTD4Q8NCY6 345 aa16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 SECISBP2LQ93073 1101 aaKnown RBP16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 FBXO28Q9NVF7 368 aa16.41■□□□□ 0.22
CLCNKA-201ENST00000331433 PRPF6O94906 941 aaKnown RBP16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 HOXD13P35453 343 aa16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 CTTNQ14247 550 aaKnown RBP16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 PIGOQ8TEQ8 1089 aa16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 MMS19Q96T76 1030 aa16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 PSMD1Q99460 953 aa16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 MLXIPQ9HAP2 919 aa16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 GCOM1H8Y6P7 765 aaPredicted RBP16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 GNA14O95837 355 aa16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 POLR2MP0CAP2 368 aa16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 MARSP56192 900 aaKnown RBP16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 POLR2FP61218 127 aaKnown RBP16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 GFPT1Q06210 699 aaPredicted RBP16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 GABPB1Q06547 395 aaPredicted RBP16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 BRD3Q15059 726 aa16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 LONRF2Q1L5Z9 754 aa16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 RABGAP1Q9Y3P9 1069 aa16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 CAPN6Q9Y6Q1 641 aa16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 MYH10P35580 1976 aa16.4■□□□□ 0.22
CLCNKA-201ENST00000331433 CETN3O15182 167 aa16.39■□□□□ 0.21
CLCNKA-201ENST00000331433 DPEP1P16444 411 aa16.39■□□□□ 0.21
CLCNKA-201ENST00000331433 EDRF1Q3B7T1 1238 aa16.39■□□□□ 0.21
CLCNKA-201ENST00000331433 HGSNATQ68CP4 663 aa16.39■□□□□ 0.21
CLCNKA-201ENST00000331433 ZC3H3Q8IXZ2 948 aaKnown RBP16.39■□□□□ 0.21
CLCNKA-201ENST00000331433 POLR3CQ9BUI4 534 aaPredicted RBP16.39■□□□□ 0.21
CLCNKA-201ENST00000331433 FUT8Q9BYC5 575 aa16.39■□□□□ 0.21
CLCNKA-201ENST00000331433 TSGA10Q9BZW7 698 aa16.39■□□□□ 0.21
CLCNKA-201ENST00000331433 RANBP17Q9H2T7 1088 aaKnown RBP16.39■□□□□ 0.21
CLCNKA-201ENST00000331433 VCPKMTQ9H867 229 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms