RNA–Protein interactions for RNA: ENST00000331163.10

PDGFB-201, Transcript of platelet derived growth factor subunit B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFB, Length 3,497 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-201ENST00000331163 WDR18Q9BV38 432 aa17.59■□□□□ 0.41
PDGFB-201ENST00000331163 IRX5P78411 483 aaPredicted RBP17.59■□□□□ 0.41
PDGFB-201ENST00000331163 CATSPERGQ6ZRH7 1159 aa17.59■□□□□ 0.41
PDGFB-201ENST00000331163 MOV10L1Q9BXT6 1211 aaKnown RBP17.59■□□□□ 0.41
PDGFB-201ENST00000331163 ITGB5P18084 799 aa17.58■□□□□ 0.41
PDGFB-201ENST00000331163 TNNT3P45378 269 aaPredicted RBP17.58■□□□□ 0.41
PDGFB-201ENST00000331163 DNA2P51530 1060 aa17.58■□□□□ 0.41
PDGFB-201ENST00000331163 USP11P51784 963 aa17.58■□□□□ 0.41
PDGFB-201ENST00000331163 NAP1L1P55209 391 aaKnown RBP17.58■□□□□ 0.41
PDGFB-201ENST00000331163 STXBP2Q15833 593 aa17.58■□□□□ 0.41
PDGFB-201ENST00000331163 FASTKD5Q7L8L6 764 aaKnown RBP17.58■□□□□ 0.41
PDGFB-201ENST00000331163 ZBED3Q96IU2 234 aaPredicted RBP17.58■□□□□ 0.41
PDGFB-201ENST00000331163 AZI2Q9H6S1 392 aa17.58■□□□□ 0.41
PDGFB-201ENST00000331163 GPRC5CQ9NQ84 441 aa17.58■□□□□ 0.41
PDGFB-201ENST00000331163 AFG3L2Q9Y4W6 797 aa17.58■□□□□ 0.41
PDGFB-201ENST00000331163 ESYT2A0FGR8 921 aa17.58■□□□□ 0.4
PDGFB-201ENST00000331163 PRAMEF19Q5SWL8 479 aa17.58■□□□□ 0.4
PDGFB-201ENST00000331163 TAF3Q5VWG9 929 aa17.58■□□□□ 0.4
PDGFB-201ENST00000331163 MLKLQ8NB16 471 aa17.58■□□□□ 0.4
PDGFB-201ENST00000331163 KIFC3Q9BVG8 833 aa17.58■□□□□ 0.4
PDGFB-201ENST00000331163 NT5C3AQ9H0P0 336 aa17.58■□□□□ 0.4
PDGFB-201ENST00000331163 TXNRD2Q9NNW7 524 aa17.58■□□□□ 0.4
PDGFB-201ENST00000331163 TRIM21P19474 475 aaKnown RBP17.57■□□□□ 0.4
PDGFB-201ENST00000331163 ECM1Q16610 540 aa17.57■□□□□ 0.4
PDGFB-201ENST00000331163 LY6KQ17RY6 165 aa17.57■□□□□ 0.4
PDGFB-201ENST00000331163 FAM47CQ5HY64 1035 aa17.57■□□□□ 0.4
PDGFB-201ENST00000331163 CYP4F22Q6NT55 531 aa17.57■□□□□ 0.4
PDGFB-201ENST00000331163 COPS5Q92905 334 aa17.57■□□□□ 0.4
PDGFB-201ENST00000331163 PDCD2LQ9BRP1 358 aa17.57■□□□□ 0.4
PDGFB-201ENST00000331163 RANBP17Q9H2T7 1088 aaKnown RBP17.57■□□□□ 0.4
PDGFB-201ENST00000331163 SMARCA1P28370 1054 aa17.57■□□□□ 0.4
PDGFB-201ENST00000331163 GRB10Q13322 594 aa17.57■□□□□ 0.4
PDGFB-201ENST00000331163 PPP1R18Q6NYC8 613 aa17.57■□□□□ 0.4
PDGFB-201ENST00000331163 SFR1Q86XK3 245 aa17.57■□□□□ 0.4
PDGFB-201ENST00000331163 FAM178BQ8IXR5 827 aa17.57■□□□□ 0.4
PDGFB-201ENST00000331163 LRRIQ4A6NIV6 560 aa17.57■□□□□ 0.4
PDGFB-201ENST00000331163 NT5C2P49902 561 aa17.57■□□□□ 0.4
PDGFB-201ENST00000331163 DHX37Q8IY37 1157 aaKnown RBP17.57■□□□□ 0.4
PDGFB-201ENST00000331163 PYM1Q9BRP8 204 aaKnown RBP17.57■□□□□ 0.4
PDGFB-201ENST00000331163 UNC45AQ9H3U1 944 aa17.57■□□□□ 0.4
PDGFB-201ENST00000331163 LAD1O00515 517 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 CD44P16070 742 aaKnown RBP17.56■□□□□ 0.4
PDGFB-201ENST00000331163 TKFCQ3LXA3 575 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 IKZF4Q9H2S9 585 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 FAM207AQ9NSI2 230 aaPredicted RBP17.56■□□□□ 0.4
PDGFB-201ENST00000331163 LAMA4Q16363 1823 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 OPLAHO14841 1288 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 CSDE1O75534 798 aaKnown RBP17.56■□□□□ 0.4
PDGFB-201ENST00000331163 SLU7O95391 586 aaKnown RBP17.56■□□□□ 0.4
PDGFB-201ENST00000331163 GGPS1O95749 300 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 NMT1P30419 496 aaKnown RBP17.56■□□□□ 0.4
PDGFB-201ENST00000331163 SREBF1P36956 1147 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 ZNF579Q8NAF0 562 aaKnown RBP17.56■□□□□ 0.4
PDGFB-201ENST00000331163 DAGLBQ8NCG7 672 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 LRRN4CLQ8ND94 238 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 NAP1L4Q99733 375 aaKnown RBP17.56■□□□□ 0.4
PDGFB-201ENST00000331163 MXRA8Q9BRK3 442 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 TRIM9Q9C026 710 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 KIAA0100Q14667 2235 aaKnown RBP17.56■□□□□ 0.4
PDGFB-201ENST00000331163 K7ENM7 598 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 PEX3P56589 373 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 CCNA1P78396 465 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 MORC3Q14149 939 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 ZC2HC1CQ53FD0 456 aaPredicted RBP17.56■□□□□ 0.4
PDGFB-201ENST00000331163 CNNM4Q6P4Q7 775 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 NEK11Q8NG66 645 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 AK8Q96MA6 479 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 HPSEQ9Y251 543 aa17.56■□□□□ 0.4
PDGFB-201ENST00000331163 GOLGA8IPA6NC78 632 aa17.55■□□□□ 0.4
PDGFB-201ENST00000331163 GOLGA8JA6NMD2 632 aa17.55■□□□□ 0.4
PDGFB-201ENST00000331163 SRGAP2CP0DJJ0 459 aa17.55■□□□□ 0.4
PDGFB-201ENST00000331163 ARHGAP29Q52LW3 1261 aa17.55■□□□□ 0.4
PDGFB-201ENST00000331163 CCDC127Q96BQ5 260 aa17.55■□□□□ 0.4
PDGFB-201ENST00000331163 ADD3Q9UEY8 706 aaKnown RBP17.55■□□□□ 0.4
PDGFB-201ENST00000331163 PNMA3Q9UL41 463 aa17.55■□□□□ 0.4
PDGFB-201ENST00000331163 SMCHD1A6NHR9 2005 aa17.55■□□□□ 0.4
PDGFB-201ENST00000331163 POLR2AP24928 1970 aaKnown RBP17.55■□□□□ 0.4
PDGFB-201ENST00000331163 PPATQ06203 517 aa17.55■□□□□ 0.4
PDGFB-201ENST00000331163 BTBD19C9JJ37 291 aa17.55■□□□□ 0.4
PDGFB-201ENST00000331163 TXNP10599 105 aaKnown RBP17.55■□□□□ 0.4
PDGFB-201ENST00000331163 OSTNP61366 133 aa17.55■□□□□ 0.4
PDGFB-201ENST00000331163 CACNA2D4Q7Z3S7 1137 aa17.55■□□□□ 0.4
PDGFB-201ENST00000331163 CDR2LQ86X02 465 aaPredicted RBP17.55■□□□□ 0.4
PDGFB-201ENST00000331163 RAD54LQ92698 747 aa17.55■□□□□ 0.4
PDGFB-201ENST00000331163 ZBTB10Q96DT7 871 aa17.55■□□□□ 0.4
PDGFB-201ENST00000331163 MPHOSPH6Q99547 160 aaKnown RBP17.55■□□□□ 0.4
PDGFB-201ENST00000331163 NOC4LQ9BVI4 516 aaKnown RBP17.55■□□□□ 0.4
PDGFB-201ENST00000331163 PXMP2Q9NR77 195 aa17.55■□□□□ 0.4
PDGFB-201ENST00000331163 POLGP54098 1239 aaPredicted RBP17.54■□□□□ 0.4
PDGFB-201ENST00000331163 TBC1D8BQ0IIM8 1120 aa17.54■□□□□ 0.4
PDGFB-201ENST00000331163 PGM5Q15124 567 aa17.54■□□□□ 0.4
PDGFB-201ENST00000331163 MNS1Q8NEH6 495 aa17.54■□□□□ 0.4
PDGFB-201ENST00000331163 GPRC5AQ8NFJ5 357 aa17.54■□□□□ 0.4
PDGFB-201ENST00000331163 GSDMAQ96QA5 445 aa17.54■□□□□ 0.4
PDGFB-201ENST00000331163 EPC1Q9H2F5 836 aa17.54■□□□□ 0.4
PDGFB-201ENST00000331163 NLRC4Q9NPP4 1024 aa17.54■□□□□ 0.4
PDGFB-201ENST00000331163 MORC2Q9Y6X9 1032 aaPredicted RBP17.54■□□□□ 0.4
PDGFB-201ENST00000331163 TNPO2O14787 897 aaKnown RBP17.54■□□□□ 0.4
PDGFB-201ENST00000331163 BMP6P22004 513 aa17.54■□□□□ 0.4
PDGFB-201ENST00000331163 PPP2R3BQ9Y5P8 575 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms