RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 MAN2A1Q16706 1144 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 NBPF10Q6P3W6 841 aaKnown RBP11.05□□□□□ -0.64
CHD3-201ENST00000330494 NBPF15Q8N660 670 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 LY9Q9HBG7 655 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 A0A0G2JLW4 131 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 ZSCAN20P17040 1043 aaPredicted RBP11.05□□□□□ -0.64
CHD3-201ENST00000330494 LMNB1P20700 586 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 NFX1Q12986 1120 aaKnown RBP11.05□□□□□ -0.64
CHD3-201ENST00000330494 GABPB2Q8TAK5 448 aaPredicted RBP11.05□□□□□ -0.64
CHD3-201ENST00000330494 MRFAP1L1Q96HT8 127 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 SLC38A10Q9HBR0 1119 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 PP2D1A8MPX8 630 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 PRR29P0C7W0 189 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 CYP27A1Q02318 531 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 RINT1Q6NUQ1 792 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 RMDN3Q96TC7 470 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 CUEDC2Q9H467 287 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 GOLPH3LQ9H4A5 285 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 NHEJ1Q9H9Q4 299 aaPredicted RBP11.04□□□□□ -0.64
CHD3-201ENST00000330494 GCFC2P16383 781 aaKnown RBP11.04□□□□□ -0.64
CHD3-201ENST00000330494 EIF4A3P38919 411 aaKnown RBP11.04□□□□□ -0.64
CHD3-201ENST00000330494 PEX19P40855 299 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 GNGT1P63211 74 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 MTMR1Q13613 665 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 TMTC3Q6ZXV5 915 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 PASD1Q8IV76 773 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 HEXIM2Q96MH2 286 aaKnown RBP11.04□□□□□ -0.64
CHD3-201ENST00000330494 MADDQ8WXG6 1647 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 FRMD3A2A2Y4 597 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 RPUSD2Q8IZ73 545 aaKnown RBP11.04□□□□□ -0.64
CHD3-201ENST00000330494 GRK7Q8WTQ7 553 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 ATP2A3Q93084 1043 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 DCP1AQ9NPI6 582 aaPredicted RBP11.04□□□□□ -0.64
CHD3-201ENST00000330494 TXNDC9O14530 226 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 POLR2BP30876 1174 aaKnown RBP11.04□□□□□ -0.64
CHD3-201ENST00000330494 FKBP3Q00688 224 aaKnown RBP11.04□□□□□ -0.64
CHD3-201ENST00000330494 NFIXQ14938 502 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 AP1ARQ63HQ0 302 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 RNF168Q8IYW5 571 aaPredicted RBP11.04□□□□□ -0.64
CHD3-201ENST00000330494 GJD4Q96KN9 370 aaPredicted RBP11.04□□□□□ -0.64
CHD3-201ENST00000330494 CALN1Q9BXU9 219 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 DNAJC17Q9NVM6 304 aaKnown RBP11.04□□□□□ -0.64
CHD3-201ENST00000330494 RNF181Q9P0P0 153 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 ARHGAP31Q2M1Z3 1444 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 YWHAGP61981 247 aaKnown RBP eCLIP11.04□□□□□ -0.64
CHD3-201ENST00000330494 ETF1P62495 437 aaKnown RBP11.04□□□□□ -0.64
CHD3-201ENST00000330494 RWDD2AQ9UIY3 292 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 SNRNP48Q6IEG0 339 aaKnown RBP11.04□□□□□ -0.64
CHD3-201ENST00000330494 THNSL1Q8IYQ7 743 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 STAG2Q8N3U4 1231 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 HSPH1Q92598 858 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 IQCDQ96DY2 449 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 TACC3Q9Y6A5 838 aa11.04□□□□□ -0.64
CHD3-201ENST00000330494 ZNF18P17022 549 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 LIFRP42702 1097 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 SPP2Q13103 211 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 ADGRF4Q8IZF3 695 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 AFAP1L2Q8N4X5 818 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 OTUD5Q96G74 571 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 MSTO1Q9BUK6 570 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 AP1M1Q9BXS5 423 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 MAGEF1Q9HAY2 307 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 GBP1P32455 592 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 PHBP35232 272 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 SRGAP1Q7Z6B7 1085 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 FOXP4Q8IVH2 680 aaPredicted RBP11.03□□□□□ -0.64
CHD3-201ENST00000330494 BRIP1Q9BX63 1249 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 HAUS4Q9H6D7 363 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.03□□□□□ -0.64
CHD3-201ENST00000330494 BZW2Q9Y6E2 419 aaKnown RBP11.03□□□□□ -0.64
CHD3-201ENST00000330494 MYO3AQ8NEV4 1616 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 K7ERI5 159 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 ASNSP08243 561 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 TCP11X2Q5H9J9 407 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 RAPH1Q70E73 1250 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 RSPH3Q86UC2 560 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 TDRD7Q8NHU6 1098 aaKnown RBP11.03□□□□□ -0.64
CHD3-201ENST00000330494 ZWILCHQ9H900 591 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 EPB41L5Q9HCM4 733 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 MROH7-TTC4A0A0A0MT08 1334 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 ECE1P42892 770 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 PPFIA1Q13136 1202 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 RPS6KA2Q15349 733 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 SLC27A3Q5K4L6 730 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 KIAA1841Q6NSI8 718 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 FAM160B2Q86V87 743 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 STK17AQ9UEE5 414 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 ADGRB3O60242 1522 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 CPSF1Q10570 1443 aaKnown RBP11.03□□□□□ -0.64
CHD3-201ENST00000330494 NCAPD2Q15021 1401 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 OR6B2Q6IFH4 312 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 CLEC10AQ8IUN9 316 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 KCTD6Q8NC69 237 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 DYDC2Q96IM9 177 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 RPF1Q9H9Y2 349 aaKnown RBP11.03□□□□□ -0.64
CHD3-201ENST00000330494 HAUS2Q9NVX0 235 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 E9PMD0 336 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 ZWINTO95229 277 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 KRT1P04264 644 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 IFNAR2P48551 515 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms