RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 USP17L2Q6R6M4 530 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 SPATS2Q86XZ4 545 aaKnown RBP8.64□□□□□ -1.03
VMA21-201ENST00000330374 WHAMMQ8TF30 809 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 TCP11Q8WWU5 503 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 TSG101Q99816 390 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 VEZTQ9HBM0 779 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 IL17RBQ9NRM6 502 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 LEMD3Q9Y2U8 911 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 FER1L4A9Z1Z3 1794 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 DISP2A7MBM2 1401 aa8.64□□□□□ -1.03
VMA21-201ENST00000330374 GRID2IPA4D2P6 1211 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 GBP2P32456 591 aaPredicted RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 ZNF844Q08AG5 666 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 UAP1Q16222 522 aaPredicted RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 SOGA3Q5TF21 947 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 HIBCHQ6NVY1 386 aaPredicted RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 USP38Q8NB14 1042 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 SNX29Q8TEQ0 813 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 RAPGEF5Q92565 580 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 C7orf25Q9BPX7 421 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 MMTAG2Q9BU76 263 aaKnown RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 TPX2Q9ULW0 747 aaKnown RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 ATP8A1Q9Y2Q0 1164 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 KLRF2D3W0D1 207 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 STXBP3O00186 592 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 KRIT1O00522 736 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 NEBLO76041 1014 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 CLTAP09496 248 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 SH3D19Q5HYK7 790 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 MSL1Q68DK7 614 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 ZNF572Q7Z3I7 529 aaPredicted RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 ARFGAP2Q8N6H7 521 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 LARP4BQ92615 738 aaKnown RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 LUC7LQ9NQ29 371 aaKnown RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.63□□□□□ -1.03
VMA21-201ENST00000330374 EIF4E1BA6NMX2 242 aaKnown RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 SART1O43290 800 aaKnown RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 CDC25CP30307 473 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 DNAJA1P31689 397 aaKnown RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 DHX9Q08211 1270 aaKnown RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 VAC14Q08AM6 782 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 PPP2R5AQ15172 486 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 TMEM259Q4ZIN3 620 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 C9orf131Q5VYM1 1079 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 C3orf67Q6ZVT6 689 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 KCNK18Q7Z418 384 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 ZNF34Q8IZ26 560 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 FUKQ8N0W3 1084 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 FGFBP2Q9BYJ0 223 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 DONSONQ9NYP3 566 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 NPHP3-ACAD11A0A0J9YXS1 232 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 TTI1O43156 1089 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 TDP2O95551 362 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 PAX7P23759 505 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 HNRNPH3P31942 346 aaKnown RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 IFNAR2P48551 515 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 NAB2Q15742 525 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 FAM133BQ5BKY9 247 aaKnown RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 HVCN1Q96D96 273 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 ACSBG1Q96GR2 724 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 INPP4AQ96PE3 977 aaPredicted RBP8.63□□□□□ -1.03
VMA21-201ENST00000330374 SPAG5Q96R06 1193 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 MAD2L2Q9UI95 211 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 TSKSQ9UJT2 592 aa8.63□□□□□ -1.03
VMA21-201ENST00000330374 RASSF9O75901 435 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 SERPING1P05155 500 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 MYL1P05976 194 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 EZRP15311 586 aaKnown RBP8.62□□□□□ -1.03
VMA21-201ENST00000330374 SCTRP47872 440 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 GRB10Q13322 594 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 ASIC2Q16515 512 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 MEI1Q5TIA1 1274 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 TCERG1LQ5VWI1 586 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 SPTY2D1Q68D10 685 aaPredicted RBP8.62□□□□□ -1.03
VMA21-201ENST00000330374 NEK8Q86SG6 692 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 DZIP1Q86YF9 867 aaKnown RBP8.62□□□□□ -1.03
VMA21-201ENST00000330374 ZNF444Q8N0Y2 327 aaPredicted RBP8.62□□□□□ -1.03
VMA21-201ENST00000330374 NSUN4Q96CB9 384 aaKnown RBP8.62□□□□□ -1.03
VMA21-201ENST00000330374 FAM84BQ96KN1 310 aaPredicted RBP8.62□□□□□ -1.03
VMA21-201ENST00000330374 TRIM51Q9BSJ1 452 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 USTQ9Y2C2 406 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.62□□□□□ -1.03
VMA21-201ENST00000330374 CCDC85CA6NKD9 419 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 PJA2O43164 708 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 CTNND1O60716 968 aaKnown RBP8.62□□□□□ -1.03
VMA21-201ENST00000330374 FGFR1OPO95684 399 aaKnown RBP8.62□□□□□ -1.03
VMA21-201ENST00000330374 TNNI2P48788 182 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 PPP2R2AP63151 447 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 CALCRLQ16602 461 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 ASTE1Q2TB18 679 aaPredicted RBP8.62□□□□□ -1.03
VMA21-201ENST00000330374 ANKRD20A8PQ5CZ79 823 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 RPAINQ86UA6 219 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 RNF10Q8N5U6 811 aaKnown RBP8.62□□□□□ -1.03
VMA21-201ENST00000330374 BLOC1S4Q9NUP1 217 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 BARHL2Q9NY43 387 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 PNMA2Q9UL42 364 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 ATP6V0A2Q9Y487 856 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 GKAP1Q5VSY0 366 aaPredicted RBP8.62□□□□□ -1.03
VMA21-201ENST00000330374 TAX1BP1Q86VP1 789 aa8.62□□□□□ -1.03
VMA21-201ENST00000330374 FAM228AQ86W67 206 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms