RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 ZNF174Q15697 407 aa20.19■□□□□ 0.82
SSSCA1-201ENST00000309328 FAM160B1Q5W0V3 765 aa20.19■□□□□ 0.82
SSSCA1-201ENST00000309328 ARL6IP4Q66PJ3 421 aaKnown RBP20.19■□□□□ 0.82
SSSCA1-201ENST00000309328 C11orf49Q9H6J7 331 aa20.19■□□□□ 0.82
SSSCA1-201ENST00000309328 MORC2Q9Y6X9 1032 aaPredicted RBP20.19■□□□□ 0.82
SSSCA1-201ENST00000309328 EMSYQ7Z589 1322 aa20.19■□□□□ 0.82
SSSCA1-201ENST00000309328 MYADML2A6NDP7 307 aa20.18■□□□□ 0.82
SSSCA1-201ENST00000309328 DKC1O60832 514 aaKnown RBP eCLIP20.18■□□□□ 0.82
SSSCA1-201ENST00000309328 F2P00734 622 aa20.18■□□□□ 0.82
SSSCA1-201ENST00000309328 PSAPP07602 524 aa20.18■□□□□ 0.82
SSSCA1-201ENST00000309328 COL6A1P12109 1028 aa20.18■□□□□ 0.82
SSSCA1-201ENST00000309328 TCF7P36402 384 aaPredicted RBP20.18■□□□□ 0.82
SSSCA1-201ENST00000309328 UBE2Q1Q7Z7E8 422 aa20.18■□□□□ 0.82
SSSCA1-201ENST00000309328 HAS1Q92839 578 aa20.18■□□□□ 0.82
SSSCA1-201ENST00000309328 SMARCAD1Q9H4L7 1026 aa20.18■□□□□ 0.82
SSSCA1-201ENST00000309328 STARD7Q9NQZ5 370 aa20.18■□□□□ 0.82
SSSCA1-201ENST00000309328 PCDHB6Q9Y5E3 794 aa20.18■□□□□ 0.82
SSSCA1-201ENST00000309328 A0A0U1RQG5 324 aaPredicted RBP20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 A0A1W2PQ45 241 aaPredicted RBP20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 A0A1W2PQY0 241 aa20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 LGR5O75473 907 aa20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 MYL3P08590 195 aa20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 MNX1P50219 401 aaPredicted RBP20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 SOX10P56693 466 aa20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 ATP2C1P98194 919 aaPredicted RBP20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 PTGDRQ13258 359 aa20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 C1orf53Q5VUE5 145 aa20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 B3GNT9Q6UX72 402 aa20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 PLPPR4Q7Z2D5 763 aa20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 NEK9Q8TD19 979 aa20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 TTC12Q9H892 705 aaPredicted RBP20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 DISC1Q9NRI5 854 aa20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 ERAP1Q9NZ08 941 aa20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 VAV3Q9UKW4 847 aa20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 SAMM50Q9Y512 469 aa20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 MROH7Q68CQ1 1323 aa20.17■□□□□ 0.82
SSSCA1-201ENST00000309328 GSTTP1A0A1W2PQM5 241 aa20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 DDX39AO00148 427 aaKnown RBP20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 WNT7AO00755 349 aa20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 CCNE2O96020 404 aa20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 LGALS2P05162 132 aa20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 SUPT20HL2P0C7V6 817 aa20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 DDIT3P35638 169 aa20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 FXR2P51116 673 aaKnown RBP eCLIP20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 SP4Q02446 784 aa20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 PTPN11Q06124 597 aaPredicted RBP20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 CXCL17Q6UXB2 119 aa20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 ABHD15Q6UXT9 468 aa20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 MIER3Q7Z3K6 550 aa20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 AFAP1L1Q8TED9 768 aa20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 GLG1Q92896 1179 aa20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 PAWRQ96IZ0 340 aaKnown RBP20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 CFAP45Q9UL16 551 aa20.16■□□□□ 0.82
SSSCA1-201ENST00000309328 IGKV6D-21A0A0A0MT36 114 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 H3BRB1 525 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 BACH1O14867 736 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 TXKP42681 527 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 PDIA5Q14554 519 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 NFRKBQ6P4R8 1299 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 DTHD1Q6ZMT9 781 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 C4orf32Q8N8J7 132 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 ERMNQ8TAM6 284 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 ATP6V0A1Q93050 837 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 VTI1AQ96AJ9 217 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 IPO9Q96P70 1041 aaKnown RBP20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 C16orf70Q9BSU1 422 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 HTATIP2Q9BUP3 242 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 SENP6Q9GZR1 1112 aaPredicted RBP20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 TMEM60Q9H2L4 133 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 UNC45AQ9H3U1 944 aa20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 TUT1Q9H6E5 874 aaKnown RBP20.15■□□□□ 0.82
SSSCA1-201ENST00000309328 FRMPD3Q5JV73 1810 aa20.14■□□□□ 0.81
SSSCA1-201ENST00000309328 SORBS3O60504 671 aa20.14■□□□□ 0.81
SSSCA1-201ENST00000309328 PTGS1P23219 599 aa20.14■□□□□ 0.81
SSSCA1-201ENST00000309328 STAT5BP51692 787 aa20.14■□□□□ 0.81
SSSCA1-201ENST00000309328 SF3A1Q15459 793 aaKnown RBP20.14■□□□□ 0.81
SSSCA1-201ENST00000309328 SESTD1Q86VW0 696 aa20.14■□□□□ 0.81
SSSCA1-201ENST00000309328 FERMT2Q96AC1 680 aa20.14■□□□□ 0.81
SSSCA1-201ENST00000309328 FAM167AQ96KS9 214 aa20.14■□□□□ 0.81
SSSCA1-201ENST00000309328 BCAS3Q9H6U6 928 aa20.14■□□□□ 0.81
SSSCA1-201ENST00000309328 ZNF302Q9NR11 478 aa20.14■□□□□ 0.81
SSSCA1-201ENST00000309328 CHMP2AO43633 222 aa20.13■□□□□ 0.81
SSSCA1-201ENST00000309328 YEATS4O95619 227 aa20.13■□□□□ 0.81
SSSCA1-201ENST00000309328 NASPP49321 788 aaPredicted RBP20.13■□□□□ 0.81
SSSCA1-201ENST00000309328 SPIRE1Q08AE8 756 aa20.13■□□□□ 0.81
SSSCA1-201ENST00000309328 ITGA7Q13683 1181 aa20.13■□□□□ 0.81
SSSCA1-201ENST00000309328 PKP1Q13835 747 aa20.13■□□□□ 0.81
SSSCA1-201ENST00000309328 NBR1Q14596 966 aa20.13■□□□□ 0.81
SSSCA1-201ENST00000309328 MFSD10Q14728 455 aa20.13■□□□□ 0.81
SSSCA1-201ENST00000309328 SNX17Q15036 470 aa20.13■□□□□ 0.81
SSSCA1-201ENST00000309328 EPHA7Q15375 998 aa20.13■□□□□ 0.81
SSSCA1-201ENST00000309328 HAUS3Q68CZ6 603 aa20.13■□□□□ 0.81
SSSCA1-201ENST00000309328 AK8Q96MA6 479 aa20.13■□□□□ 0.81
SSSCA1-201ENST00000309328 MAFBQ9Y5Q3 323 aaPredicted RBP20.13■□□□□ 0.81
SSSCA1-201ENST00000309328 ARVCFO00192 962 aa20.12■□□□□ 0.81
SSSCA1-201ENST00000309328 HAS3O00219 553 aa20.12■□□□□ 0.81
SSSCA1-201ENST00000309328 SLC26A4O43511 780 aa20.12■□□□□ 0.81
SSSCA1-201ENST00000309328 P4HBP07237 508 aaKnown RBP20.12■□□□□ 0.81
SSSCA1-201ENST00000309328 ZNF286BP0CG31 522 aa20.12■□□□□ 0.81
SSSCA1-201ENST00000309328 GNAT1P11488 350 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms