RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 UTP6Q9NYH9 597 aaKnown RBP6.94□□□□□ -1.3
VPS35-201ENST00000299138 PGRMC1O00264 195 aaKnown RBP6.94□□□□□ -1.3
VPS35-201ENST00000299138 PRPF6O94906 941 aaKnown RBP6.94□□□□□ -1.3
VPS35-201ENST00000299138 AFMP43652 599 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 CCT5P48643 541 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 PDE6CP51160 858 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 MRPL12P52815 198 aaKnown RBP6.94□□□□□ -1.3
VPS35-201ENST00000299138 ANTXR2P58335 489 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 SH3GL1Q99961 368 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 PHF20Q9BVI0 1012 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 LY9Q9HBG7 655 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 SPC25Q9HBM1 224 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 O00370 1275 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 LCA5LO95447 670 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 GYPCP04921 128 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 KRT7P08729 469 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 KRT3P12035 628 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 GRK2P25098 689 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 CAV1Q03135 178 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 FAM133BQ5BKY9 247 aaKnown RBP6.94□□□□□ -1.3
VPS35-201ENST00000299138 ACBD5Q5T8D3 534 aaPredicted RBP6.94□□□□□ -1.3
VPS35-201ENST00000299138 SFMBT2Q5VUG0 894 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 ZSCAN29Q8IWY8 852 aaPredicted RBP6.94□□□□□ -1.3
VPS35-201ENST00000299138 AFAP1L2Q8N4X5 818 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 CTNND2Q9UQB3 1225 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 UTP11Q9Y3A2 253 aaKnown RBP6.94□□□□□ -1.3
VPS35-201ENST00000299138 PFASO15067 1338 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 GIPC1O14908 333 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 RBM5P52756 815 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS35-201ENST00000299138 ADCY2Q08462 1091 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 ITIH4Q14624 930 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 RSBN1LQ6PCB5 846 aaPredicted RBP6.94□□□□□ -1.3
VPS35-201ENST00000299138 ARHGAP18Q8N392 663 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 DESI2Q9BSY9 194 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 POLR3CQ9BUI4 534 aaPredicted RBP6.94□□□□□ -1.3
VPS35-201ENST00000299138 ANKRD2Q9GZV1 360 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 LRP2BPQ9P2M1 347 aa6.94□□□□□ -1.3
VPS35-201ENST00000299138 SEC63Q9UGP8 760 aaKnown RBP6.94□□□□□ -1.3
VPS35-201ENST00000299138 H3BQF6 201 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 SERPING1P05155 500 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 ELF1P32519 619 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 FKBP3Q00688 224 aaKnown RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 GNPTABQ3T906 1256 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 TMTC3Q6ZXV5 915 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 DZIP3Q86Y13 1208 aaKnown RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 IGDCC4Q8TDY8 1250 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 TBC1D22AQ8WUA7 517 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 GFM2Q969S9 779 aaKnown RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 DYDC2Q96IM9 177 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 CSRNP2Q9H175 543 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 CNGB3Q9NQW8 809 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 NOP53Q9NZM5 478 aaKnown RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 SLAIN2Q9P270 581 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 SOWAHDA6NJG2 315 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 DKC1O60832 514 aaKnown RBP eCLIP6.93□□□□□ -1.3
VPS35-201ENST00000299138 PAEPP09466 180 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 MDH1P40925 334 aaKnown RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 DMPKQ09013 629 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 FSCBQ5H9T9 825 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 SPATA4Q8NEY3 305 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 DPF2Q92785 391 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 SYMPKQ92797 1274 aaKnown RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 ZSCAN10Q96SZ4 725 aaPredicted RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 C7orf25Q9BPX7 421 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 ROPN1BQ9BZX4 212 aaPredicted RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 PHACTR1Q9C0D0 580 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 KAT14Q9H8E8 782 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 ROPN1Q9HAT0 212 aaPredicted RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 CABP5Q9NP86 173 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 DISC1Q9NRI5 854 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 FBXL5Q9UKA1 691 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 MROH7-TTC4A0A0A0MT08 1334 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 A0A0A6YYK5 440 aaPredicted RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 TPD52L2O43399 206 aaKnown RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 CASP2P42575 452 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 NOP14P78316 857 aaKnown RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 FOXD4Q12950 439 aaPredicted RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 PREPLQ4J6C6 727 aaPredicted RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 PPP4R4Q6NUP7 873 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 BLIDQ8IZY5 108 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 TEX9Q8N6V9 391 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 DDX17Q92841 729 aaKnown RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 VCPKMTQ9H867 229 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 MKNK2Q9HBH9 465 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 SAMSN1Q9NSI8 373 aaKnown RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 GMNCA6NCL1 334 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 BAG3O95817 575 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 ASIC1P78348 528 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 RPS6KA2Q15349 733 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 ANKRD20A4Q4UJ75 823 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 ANKRD20A8PQ5CZ79 823 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 ANKRD20A2Q5SQ80 823 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 ANKRD20A1Q5TYW2 823 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 TAB2Q9NYJ8 693 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 SLC4A4Q9Y6R1 1079 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 PPARAQ07869 468 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 ACTN3Q08043 901 aaPredicted RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 DHX34Q14147 1143 aaKnown RBP6.93□□□□□ -1.3
VPS35-201ENST00000299138 PDIA5Q14554 519 aa6.93□□□□□ -1.3
VPS35-201ENST00000299138 EDRF1Q3B7T1 1238 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms